Ccal007028.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- -
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000006.1:13700126-13704371[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.9e-13 1.6e-09 37.8 0.0 1 39 333 372 333 376 0.90 2 4 2.4e-12 5e-09 36.3 0.1 2 39 388 425 387 428 0.94 3 4 8.8e-19 1.8e-15 56.9 0.0 2 45 443 487 442 487 0.97 4 4 1e-18 2.1e-15 56.7 0.1 1 42 494 536 494 537 0.97
Sequence Information
- Coding Sequence
- ATGAAACCGTATCCGTTGGACCAGCTCGCAAGGATGACGAGCCTTTACCCGAAACATGCGAAGAAGAGTCGGCCAGTCCTTCTTCCTCCGTTTTCCACTCAGAACTTGAATTCATCGAAACCGGGCATTCCTTATTTCGATCCTAAAACGCGGATCTCACTGTTGAAGACCGCCGATCAACTGAAGATCAAAGGACTCTGCGAGGTGCCCGAAACCAGAGATGGTCCACCCTCTGTGAGCCTGAGTTCGCCGCCGAGGGAACCCGGCACTCCTAGGATAAATTTCACTAAGCTGAAGAGGCATCATCCGAGATACAAGAGGCCCAGGACCGCATTCGAGCCTCGTGCAACCGATTCGAGGCATTACGATCGTTACAAAGAGGAAGAATCGAAAGATAATTACAACCGCGAGAACAAAGAGAACCATAGAGACTGGCAAGCCGATGATGAAGAGTGCACGGAGgcaaccacgggagcagtagtcttggaaagttgccagcgtaacagcaacgccagtatcgccagcaccggcaacaacaataataacaataataatagcaacaacagcaacgGTGATATGTTCTGTCACACAGGTCTCGGACACTACGGTCATCATCCGGATCCCGGAGATGTTGATCTACCACCGGAAACTCAACCTACACCACCAAGTGCCACGTTAGTCGGCACTACGATTACTCACTTAAGGGACCCGGATCACCATGCTACAGAAATCCAAACTTGCGACAGTGTAAAAATAAAATTTGAGACGTTACACACAATGGATTCATCGGACACGATCGATATCGACAGCCACATGTCAGATCGGGCGAGCGTTAGTTCTAAGAACGCAGCCGACAGCGACAATATGATGATGATCACACCAGAATTACTCGGATTAATGCCTTCTGGTAGTTCGGTACACTCGGATTCCGGGGAGACCAATTCGAGGGGTCACTCTGGACAATCGAGTTCTCATCATCACGGCTCGAAATCGTGGACTCAAGAGGATATGGATGCCGCGTTGGAAGCCTTACGAAATCACGACATGAGCCTTACAAAAGCCTCCGCAACTTTTGGTATACCTTCGACAACGTTATGGCAAAGAGCGCATCGGCTAGGTATCGACACACCGAAGAAAGATGGGCCTACCAAATCCTGGAGCGACGAGAGTTTGAACAACGCACTCGAAGCGTTACGAACTGGAACGATATCGGCGAATAAGGCATCGAAAGCGTTCGGTATACCATCAAGCACATTATATAAAATCGCAAGGAGAGAGGGCATTAGATTAGCTGCACCTTTTAATGCGAGTCCCACCACTTGGTCGCCTGCCGATCTCGATCGCGCCCTGGAAGCAATACGCTCTGGTCAGACATCGGTCCAGAGAGCCTCCACCGAATTCGGTATACCAACGGGGACTTTATATGGCCGGTGCAAAAGGGAAGGAATCGAACTTAGCAGGAGTAATCCTACGCCATGGAGCGAAGACGCTATGACTGAAGCCCTCGAAGCAGTTAGATTAGGCCACATGAGCATCAATCAAGCGGCTATCCACTATAACTTGCCGTACTCTTCTTTGTACGGTCGCTTCAAAAGAGGGAAATACGAGGAGCCATCGGTCGGCGATTTATCGCAAGACGGCAGCTGA
- Protein Sequence
- MKPYPLDQLARMTSLYPKHAKKSRPVLLPPFSTQNLNSSKPGIPYFDPKTRISLLKTADQLKIKGLCEVPETRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTAFEPRATDSRHYDRYKEEESKDNYNRENKENHRDWQADDEECTEATTGAVVLESCQRNSNASIASTGNNNNNNNNSNNSNGDMFCHTGLGHYGHHPDPGDVDLPPETQPTPPSATLVGTTITHLRDPDHHATEIQTCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGETNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPSVGDLSQDGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -