Basic Information

Insect: Cerastis rubricosa
Gene Symbol: -
Assembly: GCA_949152445.1
Location: OX424553.1:6825008-6830883[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.02 2.5 10.1 0.6 1 23 24 46 24 46 0.98

2 14 0.8 99 5.0 0.4 3 23 118 139 116 139 0.93

3 14 0.00015 0.019 16.7 0.6 3 23 147 168 146 168 0.98

4 14 3.3e-05 0.0041 18.8 1.8 3 23 175 196 174 196 0.97

5 14 0.011 1.4 10.9 1.3 1 23 202 225 202 225 0.94

6 14 0.076 9.4 8.2 0.9 2 11 232 241 231 244 0.87

7 14 0.022 2.8 9.9 0.9 1 23 317 340 317 340 0.95

8 14 0.25 31 6.6 1.0 2 23 412 434 411 434 0.94

9 14 0.00098 0.12 14.2 0.4 3 23 440 461 439 461 0.97

10 14 7.9e-05 0.0099 17.6 2.4 2 23 465 487 464 487 0.93

11 14 0.0045 0.57 12.1 0.3 2 23 493 515 492 515 0.93

12 14 0.0054 0.67 11.9 3.5 1 23 522 545 522 546 0.95

13 14 0.0096 1.2 11.1 1.4 2 23 552 573 551 573 0.93

14 14 6.8e-07 8.5e-05 24.1 2.5 1 23 579 601 579 601 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.02	2.5	10.1	0.6	1	23	24	46	24	46	0.98
2	14	0.8	99	5.0	0.4	3	23	118	139	116	139	0.93
3	14	0.00015	0.019	16.7	0.6	3	23	147	168	146	168	0.98
4	14	3.3e-05	0.0041	18.8	1.8	3	23	175	196	174	196	0.97
5	14	0.011	1.4	10.9	1.3	1	23	202	225	202	225	0.94
6	14	0.076	9.4	8.2	0.9	2	11	232	241	231	244	0.87
7	14	0.022	2.8	9.9	0.9	1	23	317	340	317	340	0.95
8	14	0.25	31	6.6	1.0	2	23	412	434	411	434	0.94
9	14	0.00098	0.12	14.2	0.4	3	23	440	461	439	461	0.97
10	14	7.9e-05	0.0099	17.6	2.4	2	23	465	487	464	487	0.93
11	14	0.0045	0.57	12.1	0.3	2	23	493	515	492	515	0.93
12	14	0.0054	0.67	11.9	3.5	1	23	522	545	522	546	0.95
13	14	0.0096	1.2	11.1	1.4	2	23	552	573	551	573	0.93
14	14	6.8e-07	8.5e-05	24.1	2.5	1	23	579	601	579	601	0.99

Sequence Information

Coding Sequence: ATGAGGAATAACGTTGTAGAAGTCCTCACAAAATCCACCGTCATGCCTTTCCGATGGCTAAAAAGTTCATATAGGTGCTTCTATTGTTATGACATCTTCCAAGAGGCCTCCGAATTGAAAAATCATCAAGAAGTACATTCGGGAGATGCAATCAAAGTCCAAGCTATGAAGAATTATTGGGAACCCGTTGTTTATATCGATGTGTCAAACCTAGCGTGTGCTCTTTGTCCGGATAAAATAACAGATCTATACGAGTTGATCGACCATTTAATTGCAATGCATGGGATTGAGTATAACAAAGATGTCGGGATATGTATGGTAGCTTTCAAGcttgataattttaatgttagCTGTCTCGCTTGCGGAGCGAATTTCTACACATTTGGCCCTCTGCTTCATCATACAAACAAAGATCATAAAGGAACATCAGCAATACTTTGCGACGTCTGCGGGCAACATTTCAAAGATGCGAACTTACTCCGACTTCACGTCAAAACTGTTCACGAAAACGCTCTTATTCTTTGCACTGAGTGCGGCGAAAAATTTGactcaaaatccaaattgaAGACGCATCAGAAAAACAGCCACGATATGGAAAAGAAATATAAGTGTGCGGACTGCTCCGAAGTCTTTCAAAGTCATTATAAGAGGTCTCGGCATATGGCAGCTGAGCACAAGAATAAGCAAGAAATCAAATGCCCTCACTGTCCGAAGACGTTTGTCTTCAGAAGAGTTGCAAGCACTGAGCAAAGTCGAGGTAAAACAGACATAGAGCAAGTGGGTCTGCCAGAAAAGCCAATACAGAATACTGCAACTGTTTCTGAAGAGGAAACCGGCAAAGCATATGACAGAATATCAGAAGAAAGACGAAAAGATCAGCTTGCGACATTACTGACAAACATCATAGAAAACTCAACCATACTCCCTTTTAGATGGAACAGAAGCCAGTTCATGTGCTTCTACTGCAAATCTTTCTTCGTCGAAAGCGCTCAACTTCGGGAACACACGGAGTCTGAACATAGAGACATCAAACTCAAAGATGTCATTATGAGGACCCTTTCTAGAGGTGGGAAGACAAAGCTGGACGTCTCCAACCTTTGGTGCACCAGCTGCGCAACCCAATTCGATACCTTCCAAGACTATTTTGACCACTTCTTAGAAATACATTGCCTTAGGATGGAAAAGGCAGTTTCGAAGTCATTTGACTGTTTCCAACTAGATGACAATGGAATGTCCTGCCTGGAATGTGGACAGTACTTCAGATTCTTTGGACCATTGCTGGCGCATACGCACAAATATCATATCGAGCAGGTTCTTTGCGAAATCTGTGGACAAGGGTTCTCTGAGAAGCACAATGTACTCAACCATGTTAGACTCATACATGGAATCAAGTCCTGTAAACATTGCAAAGAAACTTTCAGAACACAATACGCTTTGACTAATCACGTAGAAAACGTGCATAGGATTGATAAGTTAAAATGCCCGATGTGCCCAAAAATACTACGAAATAGATACTTAAAGAAACGCCATCTAGCCTTAGTCCATGACTGCAAAAGTGCGCAGTTCATATGCGAATTCTGTTCGAAAATTTTCAccagaaataataaatacatacagCATAAGCTTAGGGTACATCACAAAGAGAAAAATTGTACGTGCGAAGTTTGTGGGCACAAGACTTTCAACGAAGAAGGGCTGAAAGTACATATGGTGGTACATGGTGAAGAGAAGCCTTTCAAATGTGGGACTTGCGAGAAGACGTTTAGAAGGAAAAAGAATCTTGTTGGGCATATGAAGACGCATAGGAATGATAATATTAAGACTGTTGTTCACGTTGATAATATTGATACCTTAGTGTTAGAAGTATCTGAATAA
Protein Sequence: MRNNVVEVLTKSTVMPFRWLKSSYRCFYCYDIFQEASELKNHQEVHSGDAIKVQAMKNYWEPVVYIDVSNLACALCPDKITDLYELIDHLIAMHGIEYNKDVGICMVAFKLDNFNVSCLACGANFYTFGPLLHHTNKDHKGTSAILCDVCGQHFKDANLLRLHVKTVHENALILCTECGEKFDSKSKLKTHQKNSHDMEKKYKCADCSEVFQSHYKRSRHMAAEHKNKQEIKCPHCPKTFVFRRVASTEQSRGKTDIEQVGLPEKPIQNTATVSEEETGKAYDRISEERRKDQLATLLTNIIENSTILPFRWNRSQFMCFYCKSFFVESAQLREHTESEHRDIKLKDVIMRTLSRGGKTKLDVSNLWCTSCATQFDTFQDYFDHFLEIHCLRMEKAVSKSFDCFQLDDNGMSCLECGQYFRFFGPLLAHTHKYHIEQVLCEICGQGFSEKHNVLNHVRLIHGIKSCKHCKETFRTQYALTNHVENVHRIDKLKCPMCPKILRNRYLKKRHLALVHDCKSAQFICEFCSKIFTRNNKYIQHKLRVHHKEKNCTCEVCGHKTFNEEGLKVHMVVHGEEKPFKCGTCEKTFRRKKNLVGHMKTHRNDNIKTVVHVDNIDTLVLEVSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01532358;
90% Identity: -
80% Identity: -