Crub042052.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424553.1:7366249-7370923[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.22 27 6.8 0.1 2 23 30 52 29 52 0.94 2 18 0.4 50 6.0 0.1 1 23 76 98 76 98 0.92 3 18 9.9e-05 0.012 17.3 0.2 1 23 102 124 102 124 0.98 4 18 0.0001 0.013 17.3 0.5 1 23 129 152 129 152 0.96 5 18 0.0074 0.93 11.4 0.4 2 23 159 181 159 181 0.93 6 18 0.071 8.8 8.3 6.5 1 23 188 211 188 211 0.96 7 18 0.00012 0.015 17.0 4.3 2 23 218 239 217 239 0.96 8 18 0.00017 0.021 16.6 1.3 1 23 245 267 245 267 0.98 9 18 0.04 4.9 9.1 0.1 1 23 417 440 417 440 0.93 10 18 0.021 2.6 10.0 0.3 2 23 466 487 465 487 0.96 11 18 0.009 1.1 11.2 0.3 1 23 509 531 509 531 0.98 12 18 1.5e-05 0.0019 19.9 0.3 1 23 535 557 535 557 0.99 13 18 0.0033 0.41 12.5 1.6 1 23 562 585 562 585 0.88 14 18 4.7e-05 0.0059 18.3 0.5 2 23 592 614 592 614 0.97 15 18 5.2e-05 0.0065 18.2 1.1 1 23 621 644 621 644 0.98 16 18 0.011 1.3 10.9 4.6 1 23 650 672 650 672 0.96 17 18 3.4e-05 0.0043 18.8 2.8 1 23 678 700 678 700 0.97 18 18 0.087 11 8.1 1.2 3 23 705 726 704 726 0.96
Sequence Information
- Coding Sequence
- ATGCACTTGTCGCATTCTTTCGCTCCATTGAAAAGATTAGTCAATAATCGAAGAGAAAATGTCTTAAAAGTTGATGTAAGTGAAATTAGATGCAAGATATGTTCAGAAAAACCTCCTAGCCTGGTAGAACTCAAGCGTCATCTCAAAGAAGTACACGATAAACCAATGGATTTACAAATCCAAGATAATATGATCCCGTTCAATCTCGAATTCGTAGACGATGGATATAAATGCGTCATATGCGAACAGAATTTCATAAAAGTGCGAATTTTAGTCATCCACATGAGTGAACACTTCAATAACTATAGCTGCGAAATTTGCGGATCAGTCTTCATGACTTTACGGCTTTTGAAGAAGCATTTAGAGGTCCATGACTCTGGTAACTTTCCTTGCGATCGCTGCAATAAAGTTTTCAGTACTCCTTATAAACGTACTTTGCATATACGAGGGGTTCACCTAAAGCAGTGCCCGAGAAGATGTCCGATGTGTCCGGAGAAGTTTAACTCGAATTACAAAAGGACTATTCACTTGCAAGATGTCCATAATCAAGAGACTAGAGTGCATAAATGCAAGACTTGTGGGCGAGGATTTAATCTGAAGTATCACCTGGTCTGCCACGTTCGGTCTGTGCATCTACAGGAGAGGAATCAACAGTGTGCTGTATGCCACCAACGGTTTTGTAATAAGGAGTCTTTGAAACGTCATATGGTAATACACACAGGGGAGAAGAATCATAAATGTGACGTGTGTGGAATGGCGTTTTTGAGGAGGAACAATTTGAAGGATCATTTGCGTTTGCATGATATTAgaaTCATCCAGAAATCAAACTCAACGATCACTCTCAAAGACGAAGCTGGAAATGATATTAAACTTACAGTTCTAAAGTATCCAATTTCTTTAAATACTCTAGAATATGAAGTGAAAGATAAGACTGGCAACgataatgttaagaataaacaaaaaaagaaaattggtaAACCGAAAGAGGTCAAGAAAAGCAACGTTAAGATAGAAAACATATCTTTTCATAAATTGAAAGAACCAGTACCTATAAATAATGTCGATTGGAACAGCCAAAATGAACAAGAAAATTCAGTAACGTTCAATGTGAAAACTGTTCAAGGATTCATCCGAGCAACAACACCAAGACAAAGAAGTGAACACGATGACTACGAGGATTGCAAACAAAATGCTTTGATCATCTTCGAACATTCCTACGTCTACCCATTCATACATGCAGCCAACAAATACAAATGTGTCATCTGTTCGAAGCCTTTCCTAGACGCTATTCTATTGAAAGATCATACTATAAACGAACATACTATCAAAGAAATGAAGAGAGCATTAAATAATAGAGTTAGAGACAAAAATCTGAAAGTTGACGTCACATATCTGCAGTGTAGAATCTGTCTACAATCACTACCTGATTTACAGAACTTGAAGACGCATTTAAAAGATCATGGGAAAAATATAAAGCTGGATTTGCAGGATAATATAATACCTTACAAGTTAGGAGGAGAGAATTTCGAATGCCAAATTTGCGGAGAGAAGTATCTGAAATTAAGACTCCTAATAATTCACATGAGTAAACATTTCAATAATTACAGCTGCGAAGTCTGTGGTTCTGTATTTATATCACTGAATTTATTAAAAAGACATTTACAAACTCACGAATCTGGTAGCTTTCCTTGTAGTAAATGCGATAAAGTGTTTACGAACTCGACAAAGAGGTCTCTCCATTTTAAAGGAGTACATCTTAAGCAGTTTCCCAGAAGATGCCCGATTTGCCCTGAAAGATTCAACTCGAATTACCAACGGACGAAACATTTACGTATAGCTCATAACCAATCAACTGGTTTATATAGATGTGACACTTGTGGACGCGAATACGACTTGAAATACCATCTTCTCGTTCACATAAGGTCTGTCCATCTCCAAGAGCGGAACCACGAGTGCCCAATGTGTAGTTCGAGATTTTTCTCCAAATACTGTCTTTCGAGGCATATGGTAATCCATACTGGTGAAAAGAATTTCAAATGTGAGGTATGCGGGAAGGCATATGCAAGGAGGAAGAATCTTCGAGACCATTGCAGGTCCCATGAGGTCGGGTTGTGTAGCATTTGTGGACTAAACTGTGGTGATCATAACAGTCTTGTGGCCCATTTGAATAACTTGCATTGA
- Protein Sequence
- MHLSHSFAPLKRLVNNRRENVLKVDVSEIRCKICSEKPPSLVELKRHLKEVHDKPMDLQIQDNMIPFNLEFVDDGYKCVICEQNFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCAVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRNNLKDHLRLHDIRIIQKSNSTITLKDEAGNDIKLTVLKYPISLNTLEYEVKDKTGNDNVKNKQKKKIGKPKEVKKSNVKIENISFHKLKEPVPINNVDWNSQNEQENSVTFNVKTVQGFIRATTPRQRSEHDDYEDCKQNALIIFEHSYVYPFIHAANKYKCVICSKPFLDAILLKDHTINEHTIKEMKRALNNRVRDKNLKVDVTYLQCRICLQSLPDLQNLKTHLKDHGKNIKLDLQDNIIPYKLGGENFECQICGEKYLKLRLLIIHMSKHFNNYSCEVCGSVFISLNLLKRHLQTHESGSFPCSKCDKVFTNSTKRSLHFKGVHLKQFPRRCPICPERFNSNYQRTKHLRIAHNQSTGLYRCDTCGREYDLKYHLLVHIRSVHLQERNHECPMCSSRFFSKYCLSRHMVIHTGEKNFKCEVCGKAYARRKNLRDHCRSHEVGLCSICGLNCGDHNSLVAHLNNLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192954;
- 90% Identity
- iTF_00301423;
- 80% Identity
- -