Cleu026434.1
Basic Information
- Insect
- Cerastis leucographa
- Gene Symbol
- -
- Assembly
- GCA_963082945.1
- Location
- OY720375.1:6977116-6982899[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.12 14 7.6 1.5 1 23 123 146 123 146 0.95 2 19 0.47 53 5.8 0.1 2 23 171 193 170 193 0.94 3 19 0.49 55 5.7 0.1 1 23 217 239 217 239 0.92 4 19 0.00012 0.014 17.0 0.2 1 23 243 265 243 265 0.98 5 19 0.00013 0.014 17.0 0.5 1 23 270 293 270 293 0.96 6 19 0.0091 1 11.1 0.4 2 23 300 322 300 322 0.93 7 19 0.087 9.8 8.1 6.5 1 23 329 352 329 352 0.96 8 19 0.00015 0.017 16.7 4.3 2 23 359 380 358 380 0.96 9 19 0.00017 0.02 16.6 1.7 1 23 386 408 386 408 0.98 10 19 0.049 5.5 8.8 0.1 1 23 558 581 558 581 0.93 11 19 0.026 2.9 9.7 0.3 2 23 607 628 606 628 0.96 12 19 0.089 10 8.0 0.3 1 23 650 672 650 672 0.97 13 19 1.9e-05 0.0021 19.6 0.3 1 23 676 698 676 698 0.99 14 19 0.004 0.46 12.3 1.6 1 23 703 726 703 726 0.88 15 19 5.8e-05 0.0065 18.1 0.5 2 23 733 755 733 755 0.97 16 19 6.4e-05 0.0073 17.9 1.1 1 23 762 785 762 785 0.98 17 19 0.013 1.5 10.6 4.6 1 23 791 813 791 813 0.96 18 19 1e-05 0.0012 20.4 2.9 1 23 819 841 819 841 0.97 19 19 0.095 11 7.9 1.3 3 23 846 867 845 867 0.96
Sequence Information
- Coding Sequence
- ATGGGAAATGGATTGGACTCTGAAATACCGGATACGAAGCGAAGAATCATCCCGTTATTCCAAGTAGCTTACGACAGGAGTTTGTGTAGACCTCTTGGGTCATTGATACCCTTCGGTAAACCCCGACAAAAGTATATTAGAACATTCTCTTCACCTCCGCCAAGAGATTTCTCTCCATCCCGCAGTCCTTCCCCTGTTTACGACGCGCCTGCCCCATCGCCTTTCATAGATAGTACGCCAACTTTATCGGTCCAAACTGTAAAGCCAAAAGAGCCTAAGGCGAAGAAAACTACAGATATCAGGCAGAATGCTTTAGCTGTGTTTGAATTTTCAACGGTATATCCGTTCGTTTATGGAAGTAATAAATTCAAATGTTTCGTTTGCTCGCAACCATTTTTGGACCTAAATGAATTGAAGCTACATATGCACTTGTCGCATTCTTTCGCTCCATTGAAAAGATTAGTGAATAATCGAAGAGAAAATGTCTTAAAAGTTGATGTTAGTGAAATTAGATGCAAGATATGTTCAGAAAAACCTCCTAGTCTGATAGAACTCAAGCGTCATCTCAAAGAAGTACACGATAAACCAATGGATTTACAAATCCAAGATAATATGATCCCGTTCAATCTCGACTTTGTAGACGATGGATATAAATGCGTCATATGCGAACAGAATTTCATAAAAGTGCGAATTTTAGTCATCCACATGAGTGAACACTTCAATAACTATAGCTGTGAAATTTGCGGATCAGTCTTCATGACTTTACGACTTTTAAAGAAGCATTTAGAGGTCCATGACTCTGGTAACTTTCCTTGCGATCGCTGCAATAAAGTTTTCAGTACACCTTATAAACGTACTTTGCATATACGAGGTGTTCACCTAAAGCAGTGTCCGAGAAGATGTCCGATGTGTCCGGAGAAGTTTAACTCGAATTACAAAAGGACTATTCACTTGCAAGATGTCCATAATCAAGAGACTAGAGTGCATAAATGCAAGACTTGTGGGCGAGGATTTAATCTGAAGTATCACTTGGTCTGCCACGTTCGTTCTGTGCATCTACAGGAGAGGAATCAACAGTGTGCTGTATGCCACCAACGGTTTTGTAATAAGGAGTCTTTGAAACGTCACATGGTGATACACACAGGGGAGAAGAACCATAAATGTGATGTGTGTGGAATGGCGTTTTTGAGAAGGAAGAATTTGAAGGATCATTTGCGTTTGCATGATATTAgattCATCCAGAAATCAAACTCAACGATCACTCTCAAAGACGAAGATGGGAATGATATCAAACTTACAGTTCTAAAGTATCCAATTTCTTTAAATACTCTAGAATATGAAATGGAAGATAAGCCTGCCAACCATAATTTTaagactaaacaaaaaaagaaaattggtaaAATGATAGAGGTAAAGAAAAGCAACGTTAAGTTAGAAAACATATCTTTTCATAAGTTGAAAGAACCAGTACCAATAAATACTGTCGATTGGAACAGCCAAAATGCGCAAGAAAATTCAGTAACGTTCAATGTGAAAACTGTTCAAGGATTTATCCGagcaacaacaacaagacaaagAAATGAACACGATGACTACGAGGATTGCAAGCAAAATGCCTTGATCATCTTCGAACATTCCTACGTCTACCCCTTCATACATGCAGCCAACAAATACAAATGTGTCATCTGTTCGAAGCCTTTCCTAGACGCTATTCTATTGAAAGATCATACTATAAACGAACATACTATCAAAGAAATGAAGAGAGCATTAAATAATAGAGTTAGAGACAAAAATCTGAAAGTTGACGTCACATATCTGCAGTGTAGAATCTGTCTACAATCACTACCTGATTTACAGAACTTGAAGACGCATTTAAAGGATCATGGGAAGAATATAAAGCTTGATTTACAGGATAATATAATACCTTACAAGTTAGGAGGAGAGAATTTCGAATGCCAAATTTGCGGAGACAAGTTTTTGAAATTAAGACTCCTAATAATTCACATGAGTAAACATTTCAACAATTACAGCTGCGAAGTCTGTGGTTCTGTATTTATATCACTGAATTTATTAAAAAGACATTTACAAACTCACGAATCTGGTAGCTTTCCTTGTAGTAAATGCGATAAAGTGTTCACGAATTCTACGAAACGATCTCTTCATTTTAAAGGAGTACATCTAAAGCAGTTTCCCCGAAGATGCCCGATTTGCCCCGAAAGATTCAACTCGAATTACCAACGGACGAAGCATTTGCGTATAGCTCATAACCACTCAACAGGTTTATATAGATGTGACACTTGTGGACGGGAATACGACTTGAAATACCATCTTCTCGTGCACATAAGGTCTGTCCATCTCCAAGAGCGGAACCACGAGTGTCCTATGTGTAGTTCCAGATTTTTCTCCAAATACTGTCTTTCGAGGCATATGGTGATACATACTGGTGAGAAGAATTTCAAATGTGAGGTATGCGGGAAGGCGTTTGCAAGGAGGAAGAATCTTCGGGACCATTGCAGGTCCCATGAGGTCGGATTGTGTACCATTTGTGGATTAAACTGTGGAGATCATAACAGCCTTGTGGCCCATTTGAATAACTTGCATTGA
- Protein Sequence
- MGNGLDSEIPDTKRRIIPLFQVAYDRSLCRPLGSLIPFGKPRQKYIRTFSSPPPRDFSPSRSPSPVYDAPAPSPFIDSTPTLSVQTVKPKEPKAKKTTDIRQNALAVFEFSTVYPFVYGSNKFKCFVCSQPFLDLNELKLHMHLSHSFAPLKRLVNNRRENVLKVDVSEIRCKICSEKPPSLIELKRHLKEVHDKPMDLQIQDNMIPFNLDFVDDGYKCVICEQNFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCAVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDIRFIQKSNSTITLKDEDGNDIKLTVLKYPISLNTLEYEMEDKPANHNFKTKQKKKIGKMIEVKKSNVKLENISFHKLKEPVPINTVDWNSQNAQENSVTFNVKTVQGFIRATTTRQRNEHDDYEDCKQNALIIFEHSYVYPFIHAANKYKCVICSKPFLDAILLKDHTINEHTIKEMKRALNNRVRDKNLKVDVTYLQCRICLQSLPDLQNLKTHLKDHGKNIKLDLQDNIIPYKLGGENFECQICGDKFLKLRLLIIHMSKHFNNYSCEVCGSVFISLNLLKRHLQTHESGSFPCSKCDKVFTNSTKRSLHFKGVHLKQFPRRCPICPERFNSNYQRTKHLRIAHNHSTGLYRCDTCGREYDLKYHLLVHIRSVHLQERNHECPMCSSRFFSKYCLSRHMVIHTGEKNFKCEVCGKAFARRKNLRDHCRSHEVGLCTICGLNCGDHNSLVAHLNNLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192954;
- 90% Identity
- iTF_00302374;
- 80% Identity
- -