Crub041978.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424553.1:6841248-6848036[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.36 44 6.1 1.0 1 23 25 47 25 47 0.95 2 31 0.033 4.1 9.4 0.3 2 23 119 141 118 141 0.93 3 31 0.019 2.3 10.1 4.0 1 23 146 169 146 169 0.95 4 31 0.013 1.6 10.7 1.1 1 23 174 197 174 197 0.96 5 31 0.19 24 7.0 0.2 2 23 200 222 199 222 0.93 6 31 0.2 25 6.9 1.1 2 22 229 249 228 249 0.93 7 31 0.032 4 9.4 0.4 1 23 310 333 310 333 0.92 8 31 0.17 21 7.1 0.8 1 23 378 400 378 400 0.95 9 31 0.13 16 7.5 0.0 2 23 428 450 427 450 0.94 10 31 0.00037 0.047 15.5 0.4 2 23 471 493 470 493 0.96 11 31 0.00084 0.1 14.4 4.6 1 23 498 520 498 521 0.96 12 31 0.00058 0.072 14.9 1.2 1 23 525 548 525 548 0.96 13 31 0.27 34 6.5 0.3 2 23 551 573 550 573 0.95 14 31 0.24 30 6.7 1.3 2 20 578 596 577 601 0.91 15 31 0.012 1.5 10.8 2.2 2 23 645 667 644 667 0.93 16 31 0.00015 0.019 16.8 0.0 1 23 740 763 740 763 0.92 17 31 0.0058 0.72 11.8 2.4 1 23 801 823 801 823 0.96 18 31 0.037 4.6 9.2 0.2 3 23 852 873 852 873 0.96 19 31 0.01 1.3 11.0 1.7 1 23 893 916 893 916 0.96 20 31 4.2e-05 0.0052 18.5 0.5 1 23 921 944 921 944 0.96 21 31 0.0018 0.22 13.4 0.8 1 23 949 972 949 972 0.96 22 31 0.0014 0.17 13.7 0.9 3 23 976 997 975 997 0.95 23 31 0.015 1.8 10.5 1.3 2 21 1005 1024 1004 1025 0.94 24 31 0.051 6.3 8.8 5.9 1 23 1079 1102 1079 1102 0.95 25 31 1.1 1.4e+02 4.6 0.0 2 23 1175 1198 1174 1198 0.94 26 31 2.3e-05 0.0029 19.3 0.1 3 23 1205 1226 1204 1226 0.94 27 31 0.0041 0.51 12.2 2.8 2 23 1231 1253 1230 1253 0.94 28 31 0.013 1.6 10.7 5.1 1 23 1258 1281 1258 1281 0.96 29 31 2.8e-05 0.0035 19.0 5.0 1 23 1285 1308 1285 1308 0.97 30 31 0.00033 0.041 15.7 0.3 2 23 1315 1336 1314 1336 0.96 31 31 1.2e-05 0.0015 20.2 0.6 1 23 1342 1364 1342 1364 0.98
Sequence Information
- Coding Sequence
- ATGAGAAGACGACGGAACCTCCAAATTCTATTCAACAACACATCTATTATACCTTTTAAATGGCGCGGGAAGTACCTCTGTTTTTATTGCAGTAAAGACATATCCGAGTATACAGAATTAAGGAACCATACAAAAGCACATGGCAACTGTTCTATAAAAGACCATTCCTTAAAAGTTCTAAAAGGAGGGAAGAACATGGAAATAAAAGTCGATATCTCTTGTATTTCTTGCGAAGTTTGTGCAGAAACCTTACCTTCTTTCGATGAAATCATTGCTCATTTATTTGACAAACATGCTCTTGAGTACGACAAAGAAGTAGAAATGGCTATTGAAGAGTATAAACTTGCAAGTCTTAGTTGTACAGCTTGCGATGAAACGTTCACGTACTTCGGCTACCTGGTTTCACATGTCAACAATAACCACCCCAAAAACTGCCACATTTGCGAGAACTGCAATCAGAAATTCAACAAAAGAAGAGATCTCTTTTCTCACGTGAAAAACTATCATAGAGAAGGAGGATACAAATGCGAAATGTGCCCTCAAGTCTTCAATTCAATgaatattttaagaaaacacAGAAACAATAGACATTTGACTCGCTGCAATATATGCAATTTGAAACTACCGTCAGCTTCTATGAGACAAAAGCATATCGACTTAGAACACCCAGATGACGGGTCTTTGCAATGCGATGCGTGCTTCAAGGAGTTCCATACGAAACGAGGCCTTAAGATGCATGCAAGGAAATGTAAAGGAGAAGAGATTTTCGGGATCGCGATCAAAGAAGAAAACTCAGCCATGGACTTAGATTTAGACGAAAATTACGAGGATCCGGTCAAAAGACCTTGCGTCAAACAACTTCGGGAAAATATAGTCACAATAATTAACATGTCGACCGCAATACCTTTTAACTTTTATAAGAATAAGTTCAACTGTTTTTACTGCTCCAAAGATTTCGGCGATTCTGATTTGATGAGAGAACACACGGTTATAGAACACCCCGTATGCGACGTTAACGAGAAATATTTGGAAACTGGGGTGACAAGGCACAGTGCTAGTTATCTAAGGAGGCGAAATCTGCAAATATTACTCAACCACACAACGTTGATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGCGGAGATGATACGAAGACGCCCGATCGTCTCCGAAAACACACCAAAGCTCACGGACCTTGCAGTGATAGGGACAGAGCCATAAGACTAATTAAATCAGCTGATATAGAAATCAAAATAGATGTTTCCGATGTTAGTTGCGAAATTTGTTCAGAATCTTTTCCGTTTTTAGACGAAATCATCGACCATTTGATTGTCAAACACCAATTGCCCTATGCTAAAGACATAGACATATTCTTTTCGACCTACAGGTTATTAGACCTACAATGTCTCCTATGCGATAGAAGCTTCAATTACTTACGTAAATTAATTAGCCATATGAATGTCGTTCATCCGAATAACAGCTACGAGTGTCCTAAATGTACAAAGAAGTTTAATAAGAGGAGAGATTTAGATTCGCATAAGAGACTGCATCATAAGACATGCCATTCTTGCACCAAATGCGATGAGAAGTTTCCTACCAACACAGCGTTACAAGGTCACAGGTCTACCGCTCATTCTTCGACCTGCAACATCTGCTTTCAAGTCTTTGCGTCCGATGGAAAGAGGCTAGCTCATCTTAAATCGGAGCATGTCGCTGAAAACCAATGTGGATTCTGCAATAAAATTCTAACAactaaacaagcttttataagaCATGCTGCAAATTGCGAACATAAACCAGAAGAATCCATCGTAGTtgatgaagaagaaaaaaagattTCTGTTAAAGAAATAAGAAAGGGTTTAGCTGCCATCTTTAATATGACTACCGCACTTCCTTTTAAATTCTTCATGAACAGGCTACGATGTTTCTACTGCACAAAAGACTTTATTTCTTGCGAGGACTTAAAGGAACATACTTTGAACGAACATCCGCTTTGCGATATATCTTTCAAATCTATGAGGTTACGAAACAGATATGACGGAGTTAAAATCAAAGTTGACACTTCTGCTTTGTCTTGTAGACTGTGCCATATCTCCTTGGAGGATTTGAACGATGTGGTGGAGCATTTGACCAAAGAGCATAAGGTGAAATCCTACTTTTCTGTAGAGAGTAATCTACAGCCTTTCAAACTGATTAAAGACAATTACCCATGCCCTATTTGTGGGGAAGTTTTTAGATACTTTGGGCTCCTACTCAAGCACGTTAGTGCGTCTCACAGtgATGGTCTACCAGGGCCGTACGAAGGCTGTACCTCTGAGAGACGACGGAAAAACTTGAAAATACTGTTCAACCACACAACCATCATGCCTTTTAAATGGCGAGGCAAATATCTTTGCTTCTACTGCGGTAAAAACTATACAGAATACATAGAATTCAGAAAGCATACAAAATCTCACGGGCTATGTACCACTAAAGATTACTCCCTCAAATTAATCAAAGGAAACAACGTCGAAATTAAAATCGATGTCTCGGAAATTGGTTGTGACATCTGTAATGAAACCTTTAACAGATTCGAAGAAATAATTGATCATTTGATATCGAAACACAATTtagaatacaataaaaacatCGATATACCCTTCCAGGAATACCGTTTAGTAGATTTTCGATGTTTACACTGCGAAGAACAGTTTTCCTACTTCGGATATTTGGTTAAACATGTTAACAATGCGCACCCTCAGAACTGTTTCATATGCGATGATTGTGGAGTTACTTTCAACAAGAAAAGAGATTTGTCTGTACACTTAAGGAATTATCACAGACAAGGAGGTTATCCCTGCGATTTATGCTTGAAAAACTTCGAAACACGTCTAATGTTGCGGAGGCATCAAAATAACATGCATTTCAGACACTGCAAGAGCTGCGGTTTGCGATTCGCGTCCCTTTCTCTCTTACAAAAACATGTACTAGTCGATCATCCTCAAAGTGAGAGCAATATGAAGTGCAGTTACTGCTCCAAAGAGTTTCACACTTCTTTAGGCTTACGGCAGCATATAAGCAAATGTAAAGTAAAAATTATATCCCAGGTCGAACCACAAACTTCTTTCTTGAACGACAGTAATATTGAACCGaagaaaaaacagaatataTTACAAATAAGACAGAACATACAGTGTGTACTAAATATGTCGACTGCTGTGCCTTTCAAATTCTTCTCCAAATACTCCTGTTTTTATTGCTCAAAGAAATTCGTAGAATTCGACGAGTTACGCCACCATACCTGTCTTGAACATCCTGTTTGTGATTTGAAATCCAAATGCATGAAGAAATGTAAAGGAGAAAGGATAGCTGTCAAAATCGATATATCCACGTTAGCTTGTAAATTATGTTGCCTTCCCATGCCTAACTTAGAAGATTTGATCAACCATTTAATAGCTGAACATAAAGCTAATTACGATACGTCAATTTCTGGATGTTTGGAACCTTTCAGGGTTATAAAGGACAATATGCCATGTCCTATATGCCCCGATACTGTATTCAGATACTTCGGCATATTGCTTCGTCATATGAACTCCGAACACAGCAACAATAATCGAATATGCGATTTCTGCGGTCGAAGTTTTAGAAACGCAGCAAATCTTAACGTGCATATAACCTACGCACATACCGGTTCATGCGAATGTGACATTTGCGGTGTTAAATATAAGAACCAATGGTGTTTGGCACGGCATCGAGCGAGAACTCACGATGCGAAGGACCATAAATGTCCGAAATGCCCCGAGCAGTTCCAGTCACAGTATCATAAGCAAAAACATCTAATAAAGATGCATAATGTAGGACATAAATGTAGTTATTGCGGAAAAATGTTTACAAGAAACTCTTTCATGAAAGACCATGTTAGAAGAACACATTTGAAAGAAAAGAACATACCATGCTCAATATGTAACGAGAAGTTTTTCGATAACTATCTTCTGAGGATGCATATGGTAAAGCATGAAGGCGATAGGAAATTCAGTTGTACAGTTTGCGGAAAAGCCTTTTTGAGACGAAGTAATTTGAGCTCGCATATGGAAATGCATAAGAAGTATGGGCATGTCCAGTTGTAG
- Protein Sequence
- MRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDISEYTELRNHTKAHGNCSIKDHSLKVLKGGKNMEIKVDISCISCEVCAETLPSFDEIIAHLFDKHALEYDKEVEMAIEEYKLASLSCTACDETFTYFGYLVSHVNNNHPKNCHICENCNQKFNKRRDLFSHVKNYHREGGYKCEMCPQVFNSMNILRKHRNNRHLTRCNICNLKLPSASMRQKHIDLEHPDDGSLQCDACFKEFHTKRGLKMHARKCKGEEIFGIAIKEENSAMDLDLDENYEDPVKRPCVKQLRENIVTIINMSTAIPFNFYKNKFNCFYCSKDFGDSDLMREHTVIEHPVCDVNEKYLETGVTRHSASYLRRRNLQILLNHTTLIPFKWRGKYLCFYCGDDTKTPDRLRKHTKAHGPCSDRDRAIRLIKSADIEIKIDVSDVSCEICSESFPFLDEIIDHLIVKHQLPYAKDIDIFFSTYRLLDLQCLLCDRSFNYLRKLISHMNVVHPNNSYECPKCTKKFNKRRDLDSHKRLHHKTCHSCTKCDEKFPTNTALQGHRSTAHSSTCNICFQVFASDGKRLAHLKSEHVAENQCGFCNKILTTKQAFIRHAANCEHKPEESIVVDEEEKKISVKEIRKGLAAIFNMTTALPFKFFMNRLRCFYCTKDFISCEDLKEHTLNEHPLCDISFKSMRLRNRYDGVKIKVDTSALSCRLCHISLEDLNDVVEHLTKEHKVKSYFSVESNLQPFKLIKDNYPCPICGEVFRYFGLLLKHVSASHSDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYIEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNETFNRFEEIIDHLISKHNLEYNKNIDIPFQEYRLVDFRCLHCEEQFSYFGYLVKHVNNAHPQNCFICDDCGVTFNKKRDLSVHLRNYHRQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVLVDHPQSESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVEPQTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTCLEHPVCDLKSKCMKKCKGERIAVKIDISTLACKLCCLPMPNLEDLINHLIAEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041089;
- 90% Identity
- -
- 80% Identity
- -