Aexc046003.2
Basic Information
- Insect
- Agrotis exclamationis
- Gene Symbol
- -
- Assembly
- GCA_950005045.1
- Location
- OX465446.1:6187997-6216107[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 6.8 9.3e+02 2.1 0.6 1 23 236 258 236 258 0.93 2 32 0.011 1.5 10.9 0.3 2 23 330 352 329 352 0.95 3 32 0.083 11 8.1 3.9 1 23 357 380 357 380 0.94 4 32 0.0073 1 11.5 1.0 1 23 385 408 385 408 0.96 5 32 0.24 33 6.7 0.2 2 23 411 433 410 433 0.93 6 32 0.15 20 7.4 1.2 2 22 440 460 439 460 0.94 7 32 0.46 63 5.8 0.4 1 22 521 542 521 544 0.87 8 32 0.056 7.6 8.7 0.7 1 23 607 629 607 629 0.95 9 32 0.0014 0.19 13.7 0.2 2 23 700 722 699 722 0.96 10 32 0.0086 1.2 11.2 3.8 1 23 727 750 727 750 0.96 11 32 0.00023 0.032 16.2 0.8 1 23 754 777 754 777 0.95 12 32 0.41 57 5.9 0.2 2 23 780 802 779 802 0.95 13 32 0.0076 1 11.4 0.2 2 19 808 825 807 827 0.96 14 32 0.0014 0.19 13.7 0.0 1 23 972 995 972 995 0.92 15 32 5.3e-05 0.0073 18.2 0.9 1 23 1000 1023 1000 1023 0.95 16 32 0.015 2.1 10.4 0.1 3 22 1031 1050 1030 1052 0.84 17 32 0.00023 0.031 16.2 1.4 2 23 1058 1080 1057 1080 0.97 18 32 0.0011 0.15 14.0 2.9 1 23 1117 1139 1117 1139 0.98 19 32 0.15 21 7.3 0.1 3 23 1168 1189 1166 1189 0.94 20 32 0.14 19 7.4 3.3 2 23 1210 1232 1209 1232 0.94 21 32 5.3e-05 0.0072 18.2 0.5 1 23 1237 1260 1237 1260 0.96 22 32 0.0023 0.31 13.0 0.8 1 23 1265 1288 1265 1288 0.96 23 32 0.0014 0.19 13.7 1.6 3 23 1292 1313 1289 1313 0.91 24 32 0.019 2.5 10.2 1.3 2 21 1321 1340 1320 1341 0.94 25 32 0.02 2.7 10.1 2.6 1 22 1395 1416 1395 1418 0.90 26 32 1.4 1.9e+02 4.2 0.0 2 23 1491 1514 1490 1514 0.94 27 32 2.9e-05 0.004 19.0 0.1 3 23 1521 1542 1520 1542 0.94 28 32 0.0052 0.71 11.9 2.8 2 23 1547 1569 1546 1569 0.94 29 32 0.016 2.2 10.4 5.1 1 23 1574 1597 1574 1597 0.96 30 32 3.6e-05 0.0049 18.7 5.0 1 23 1601 1624 1601 1624 0.97 31 32 0.00041 0.057 15.4 0.3 2 23 1631 1652 1630 1652 0.96 32 32 1.5e-05 0.002 19.9 0.6 1 23 1658 1680 1658 1680 0.98
Sequence Information
- Coding Sequence
- ATGGAGTTTGACGAGATTGTGGTGAAGGAGAGCCCCGGGCTATGCCGGTGCTGCCTTTCCGAAGGATGCTACAAGGATCTGGGGACGGAATACACTTGGATGAATGAAACCGAAGTTTATGCTGATATGCTGCTAGAATGCTTTGATATTAGCATAACGCAACACAATGAAGGTCCAAACGGTCCGAACCGACTCATCTGCGAGGTCTGCATTACTCGGTTACGAGACGCATGTAACTTCAAGAAACAAGTCATGGACTCGGAGAAGAAGTTCATCGATATGATGGGCAGGGGAGAGTTTAGACCAAAGATGCTAATCTACCAGACGCAGCTGAAGTGTGAGGTTCCATCAACAACCGAGGTACCCATTGAAGAGGCTGATGTGGAGTATCTTGAAGATGAAATTGATTTTGGGGATGATGACCTAAAAGAAGAATTAACCCAGCCTTCAGTGTCAGATGTGACAGTATCCACTCTACCCATTAAGGGCAAGCGAGGACGTCCCCGCAAGAATGCACCAGCCAAGCCGGAGAAGCGAGCCAAAGTTGCCAAGTTAGATGACAAGGCAAAGAGTTCCAAAGCTGTTGCTAAAGGTAAAAAACCGAAGATATACAAGAAAACAGAATCTTCCTCGATGAAAAGACGACGGAATCTCCAAATTATTTTCAACCACACGTCTATAATACCTTTTAAGTGGCGCGGGAAGTATCTTTGTTTCTATTGCAGCAAAGATATGGCAGAGTATACAGAGCTAAGAGACCATACTAAAGCGCATGGGAACTGTTCCATAAAAGACCATTCTTTAAAAGTCTTAAAAGGTGGTAAAAACATGGAAATCAAAGTAGATATATCTTCCATTTCTTGCGAAGTTTGCGCAGAAACTTCGCCGACTTTCGAAGGAATTATCACTCATTTATTTGAGAAACATTCTCTTGTATACGATAAAGGAGTAGAAATGGCTATTGAGGAGTATAAACTGGCTAGTCTTAGCTGTACAGCTTGCGATGAAACATTCACGTACTTCGGTTATCTAGTTTCACATGTAAATACGAATCACCCCAAAAATTGCCACATTTGCGAGAGTTGCAATCAAAAATTCAATAAACGCCGTGATCTATTTTCTCATGTCAAAAACTACCATCGTGAAGGTGGTTACAAATGCGAAATGTGTCCTCAAGTCTTCAGCTCAATGAATATTTTGAGAAAACACCGAAATAATAGACATTTGACTAGATGTAACATCTGCAATTTGAAACTACCCTCAGCTTCTATGAGACAAAAGCATATAGATTTGGAACACCCGGACGATGGGTCTTTACAATGCGATGCTTGCTTTAAAGAGTTCCACACGAAACGAGGCCTCAAAATGCATGTGAGAAAATGTAAAGGCGAAGAGATTTTCGGCATCGCGATCAAAGAAGAAAACTCGGTCATGGATTTAGACTTAGACCAAAACTATGAAGAACCGGTTAAAAAACCGTGCGTTAAACAACTCCGGGAAAATATTGTCACAATAATTAACATGTCTACCGCAAtaccttttaatttttataagaataagtTCAACTGCTTTTACTGCTCCAAAGATTTCGGCGATTCAGATGTGATGAGGGAACATACGGTCTTAGAACACCCAGTTTGCGatgttaatgaaaaatgtatcagGAAGTGTAGGGAATCGATATCCTGCGTCAAAATCGATATTTCTTCACTCGCTTATTTGGAAACAAAGGTGCACAGTGCTAGTTATCTAAGGAGGCGAAATCTGCAAATATTACTCAACCACACAACGTTGGTACCGTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGCGGTGACGATACAGACACGCCCAAAAATCTCCGGAAACATACGAAGGCTCACGGACCTTGCAATGataaagacagagctatacaacaAATAAAATCAGCTGATGTAGAAATCAAAATTGATGTTTCCGATGTTACCTGCGAGATTTGTTCAGAATCTTTACCATTTTTAGACGAAATTATTGATCATTTGATATTTAAACACAAATTGCCATACGATAAAGACGTCGAGATGTGCCTATCAGCTTACAGACTCTCAGATCTCCAATGCCTTCTTTGCGATAAAAGTTACGACTACCTTCGTAAACTTATCACTCATATGAATGTTGCTCATCCGAATAACAGTTATGAGTGCACTAAATGTTCAATGAAGTTCAATAAAAGAAGGGATTTAGAGTCACATAAGAGATTCCGTCATAGGAAATGCTATCCTTGCACTAAATGCGATCAGAAATTTCCAACAAACAACACGCTACAAGTTCATAGGTCTAACGATCATTCTTCAACCTGCAACATCTGTTTTCAAGTATTTCCATCTGATGCGAAAAGGTTAGCCCATCTCAAATCCGAACATGAATCTGAACAAAGCCAATGCGGATTCTGTAATAAAGTCTTCCCAACTAAACAAGCTTTTATAAGACACTCCGGTAAATGCGAGCAAACACCAGCCGAACAGCCCATCTTACTtgatgaagaagaaaaaaagataTCAGTTAAAGAAATAAGGAAAAGTTTAGCAGCCATCTTCAATATGACCACCGCATTACCTTTCAAATTCTTCATGAATAGGCTACGCTGTTTTTATTGCACGAAAGATTTTATCTGTTGTGAAGGTTTAAAGGAACATACGTTGAACGACCACCCTCATTGCGATATAAACTTTAAGTCTATGAAGCTAAAGAACAGATATGATGGTGTTCAAATCAAGGTTGATACTTCTGTTTTGTCCTGTAGACTTTGTCATATCAACTTGCAGGATTTAAACGATGTGGTCGATCATTTGACCAAAGAGCATAAGGTCAAATTCAACTTTACTGTTGAGGGTTATTTACTACAGGCTTACAAACTGGTCAAAGACAACTATCCTTGCCCTATTTGCGGTGAAGTTTTCAGATACTTTGGGGTCTTGCTTAAGCATGTTAGTGCGTCACATACTGGAAATAATCACATATGCATGTACTGCGGAAAAGCTTTTAGAACGGACCCGAATTTAAGAGCTCATATTTCAAGAAGACATAAAATCCCTGACAGTAACAAGTGCATTACTTGCGGTCTTGTTTTTCCGACAAATTCTGCGTTAAAGAGCCATCAGGGAGCCGTACATGGTAAAAAGTTAGTCAAATGCTTCAAATGTAATGAGAAATTCACTTCGCAATATGCTATGCAGAGACATTTGATCACCTCTCATGATGGTCTACCAGGGCCGTATGAAGGCTGTACCTCTGAGAGACGGCGGAAAAACTTGAAAATACTGTTCAACCACACCACGATCATACCTTTTAAATGGCGAGGGAAATATATTTGCTTCTACTGCGGACAAAACTATACAGACTACACAGAATTTAGAAAACATACAAAATCCCACGGACTATGCACTACTAAAGATTACTCCCTCAAACTGATCAAAGGAAAAAACGTTGAGATAAAAATCGATGTCTCTGAGATCGCTTGTGACAACTGCAATGAACCTTTCAACAGATTTGAAGAAATAATTGATCATTTGATCTCGAAACATAACTTGGAGTACAACAAAAACATCGATATACCTTTCCAGGAATATCGCTTAGTCGATTGTCGATGTTTGCATTGTGAAGAACAATTCTCTTACTTCGGTTATTTGGTTAAGCATGTGAATAATGTACATCCGCAGAATTGTTTTATCTGCGACGATTGTGGAGTTACTTTCAACAAGAAGAGGGACTTGTCTGTACATTTGAGGAATTACCATAAACAAGGAGGATATCCTTGCGATTTGTGCCTAAAAAACTTCGAAACTCGACTTATGTTGAGGAGACATCAGAACAATATGCATTTCAGATGCTGCAAGAGCTGTGGTTTGCGTTTCGCCTCCCTTTCTCTCTTACAAAAGCACGTACAAGTTGAACATCTACAAAATGAAAGTAATATGAAGTGTAGTTACTGCTCTAAGGAGTTCCACACGTCTTTAGGCTTACGACAACATATAAGCAAATGCAAAGTGAAAATAATTTCGCAGGTTGAACCACAAACGTCGTTCCTTGATGACAGTAACATAGAGCCTAAGAAAAAACAGAATGTCTTACAAATAAGACAGAACATACAATGTGTATTAAACATGTCGACAGCAGTGCCTTTCAAATTCTTCTCCAAATACTCCTGCTTTTATTGCTCAAAGAAATTCGTAGAATTTGACGAGTTACGCCACCATACCGGCCTTGAACACCCCGTGTGCGATTTGAAGTCCAAAAGCATGAAGAAATGTAAAGGAGAAAGAATAACCGTTAAAATCGACATTTCTGCCTTAGCTTGTAAAGTATGTTGTCTTCCTATGCCTAACTTAGAAGATTTGATCAACCATTTGATAGCAGAACACAAAGCGAATTACGATACGTCAATTTCTGGATGTTTAGAACCATTCCGGGTAATAAAAGACAACATGCCTTGTCCCATATGCCCTGATACAGTCTTCCGATACTTCGGAATTCTGCTTCGTCATATGAACTCGGAACATAGCAACAACAACCGAATTTGTGACTTTTGTGGTCGAAGCTTTCGTAACGCGGCAAATCTAAACGTGCATATAACCTACGCACATACAGGTTCATGCGAATGCGACATTTGTGGAGTTAAATATAAGAACCAATGGTGTTTGGCACGGCATAGGGCGAGGACCCACGATGCTAAGGACCATAAATGTCCAAAATGCCCGGAGCAGTTCCAGTCACAGTACCACAAACAAAAACATCTAATAAAAATGCATAATGTAGGTCACAAGTGTAGTTACTGCGGTAAAATGTTCACCAGAAACTCTTTTATGAAAGATCATGTTAGAAGAACGCATTTGAAAGAGAAGAACATACCTTGCTCGATTTGTAATGAAAAGTTTTTCGATAATTATCTTTTAAGGATGCATATGGTAAAACATGAGGGAGATAGGAAATTCAGTTGTACAGTTTGTGGAAAAGCGTTTTTGAGACGGAGTAACTTGAGCTCACATATGGAGATGCATAAGAAATACGGACATGTGCAGTTGTAG
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGTEYTWMNETEVYADMLLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVMDSEKKFIDMMGRGEFRPKMLIYQTQLKCEVPSTTEVPIEEADVEYLEDEIDFGDDDLKEELTQPSVSDVTVSTLPIKGKRGRPRKNAPAKPEKRAKVAKLDDKAKSSKAVAKGKKPKIYKKTESSSMKRRRNLQIIFNHTSIIPFKWRGKYLCFYCSKDMAEYTELRDHTKAHGNCSIKDHSLKVLKGGKNMEIKVDISSISCEVCAETSPTFEGIITHLFEKHSLVYDKGVEMAIEEYKLASLSCTACDETFTYFGYLVSHVNTNHPKNCHICESCNQKFNKRRDLFSHVKNYHREGGYKCEMCPQVFSSMNILRKHRNNRHLTRCNICNLKLPSASMRQKHIDLEHPDDGSLQCDACFKEFHTKRGLKMHVRKCKGEEIFGIAIKEENSVMDLDLDQNYEEPVKKPCVKQLRENIVTIINMSTAIPFNFYKNKFNCFYCSKDFGDSDVMREHTVLEHPVCDVNEKCIRKCRESISCVKIDISSLAYLETKVHSASYLRRRNLQILLNHTTLVPFKWRGKYLCFYCGDDTDTPKNLRKHTKAHGPCNDKDRAIQQIKSADVEIKIDVSDVTCEICSESLPFLDEIIDHLIFKHKLPYDKDVEMCLSAYRLSDLQCLLCDKSYDYLRKLITHMNVAHPNNSYECTKCSMKFNKRRDLESHKRFRHRKCYPCTKCDQKFPTNNTLQVHRSNDHSSTCNICFQVFPSDAKRLAHLKSEHESEQSQCGFCNKVFPTKQAFIRHSGKCEQTPAEQPILLDEEEKKISVKEIRKSLAAIFNMTTALPFKFFMNRLRCFYCTKDFICCEGLKEHTLNDHPHCDINFKSMKLKNRYDGVQIKVDTSVLSCRLCHINLQDLNDVVDHLTKEHKVKFNFTVEGYLLQAYKLVKDNYPCPICGEVFRYFGVLLKHVSASHTGNNHICMYCGKAFRTDPNLRAHISRRHKIPDSNKCITCGLVFPTNSALKSHQGAVHGKKLVKCFKCNEKFTSQYAMQRHLITSHDGLPGPYEGCTSERRRKNLKILFNHTTIIPFKWRGKYICFYCGQNYTDYTEFRKHTKSHGLCTTKDYSLKLIKGKNVEIKIDVSEIACDNCNEPFNRFEEIIDHLISKHNLEYNKNIDIPFQEYRLVDCRCLHCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSVHLRNYHKQGGYPCDLCLKNFETRLMLRRHQNNMHFRCCKSCGLRFASLSLLQKHVQVEHLQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVEPQTSFLDDSNIEPKKKQNVLQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTGLEHPVCDLKSKSMKKCKGERITVKIDISALACKVCCLPMPNLEDLINHLIAEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00302367;
- 90% Identity
- -
- 80% Identity
- -