Crub011654.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424528.1:23845748-23847586[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-07 0.00018 22.5 0.0 3 40 17 54 15 59 0.86
Sequence Information
- Coding Sequence
- ATGGTGAAAGTACGTCCAAGAAAGACAACCAAAGCCAACTGGACTATGGACCAGCTGACGAAGGCTATCAAGCTAATCGATGAAGAGGGATATACAATGAGGAAAGCTGCACTTGCAATGAACATTCCATTTTCAAGTTTACACAAGagatacaaaaaaacaaataagaaacCTCGCCTCGGACGAACTACTGTTTTCACGCCTGAGATTGAACAAGAATTTGCGTCCACTgtcaaaaatatgtcaaatctTTTTTATGGATGCACCGCAACGCAAGTACGAAAAGCGGCATTCGATTATGCGGAATCCCTTAACTTGAAGCATAATTTTAATAAGCAATCCAAAATGGCTGGTCGTGTTTGGTTCGAAGGATTTACTAGCAGGAATAACATATCCATACGAAAGCCTGAGGCAACGAGCATTCACAGGATCACAGCTTTTAATAAAACGGAGGTTCACCGGTTCTATCAactgctggaagaaattatggctagatttaaatttcaacctaaaaacatttataactGTGATGAAACAGGAATTTCAACTGTCCAAGAGCCAGGCAAAGTGTTGGCCACCAAAGGGCAGAAGAGGGTGGGCTCAATCACAAGTTGGGAAAGGGGGAAAAATGTAACTCTTCTTTGTGCAATGAGCGCTGCTGGTGGATACGTTCCACCAATGTTTATTTTGCCACGGAAAAGAATGACACCAACTCTCGAAAAAGGTGGCCTAGCCGGAGCAATTTATAGATGTTCAGATAGTGGGTGGATTAATGAGGATCTTTTTCTGGGGTGGCTTGAGCACTTCAACAATCATGCAAAACCTTCTGAAAATGAGCCAGTTTTGTTGATTTTAGACAACCACGCAAGCCATATTTCACTAGCCATCCACGAATACTGCAAAACTAATCATATTCACATGCTTTCTTTGCCACCGCACACCTCTCATCGCATGCAACCACtagatgtttctttttttggacCATTTAAGGCAGCTTACAAAAGAGAATGTGATTTCTTTATGAAGAGTCATTTAGCTGAAAGAATAACACCATATGATTTAGCGTCGTTGGTTAAAAAAGCATTCTCCAATGTCGCCACTATAAGCAAAGGCGAAGCAGGATTCAAAGCTACGGGTATTTTTCCACTGAACCCAAACGTCTTTACAGATGAAGATTTTGTAGCTGCTGAAGTCCTGCAATCTGAGCCTAACATAGTTGAAGATGTTGATCCTACAGCAGTACAACCATCTGCTGCTGACTTTGAACAACATAGTCCTCCTATTCCTAGTACATCGAGGGACTTTAATCAATTTACACCTGAACATACTACAGTGTCAACGTCTACACCTGAGCTGCCATTACCTATCACGACAAAAATACAAGATTTCATCCAGATGCCCAAAAAAACTCTTTTCCTTAAAACCAGACAAGGAAGAAAGAAACAACATGCAACCCTTCTCACTTCAATACCAATTAAAGATACTTtgattgaaaaagaaaacaagaagAAAGCTAAGAATGAAAAAGTGAAGGGAAAAGGTATAGGAAAGAAAAGCAAGCCTACGGCTGTCCTGAAGGCTACTACTGCTGCTAAAGTAAAGAAAAGAATTCTACGGGAATCTAATGAGTCATCATCGTCGTCTGAAGTCAAAACAGATGATTTATGTCAAGATGATATAAACGACGATGTAGAAGACACTGGAAACCAGTGTCTCATATGTGGTGAATTCGGAAAAGATAAAGAAATGTGGTATCGTTGTACTTCTTGTGGGCTTTGGGCACGTTCAGAGTGCACTGGGTGGGAATCTGCCCGTAATTATGTATGTGACAATTGTTGA
- Protein Sequence
- MVKVRPRKTTKANWTMDQLTKAIKLIDEEGYTMRKAALAMNIPFSSLHKRYKKTNKKPRLGRTTVFTPEIEQEFASTVKNMSNLFYGCTATQVRKAAFDYAESLNLKHNFNKQSKMAGRVWFEGFTSRNNISIRKPEATSIHRITAFNKTEVHRFYQLLEEIMARFKFQPKNIYNCDETGISTVQEPGKVLATKGQKRVGSITSWERGKNVTLLCAMSAAGGYVPPMFILPRKRMTPTLEKGGLAGAIYRCSDSGWINEDLFLGWLEHFNNHAKPSENEPVLLILDNHASHISLAIHEYCKTNHIHMLSLPPHTSHRMQPLDVSFFGPFKAAYKRECDFFMKSHLAERITPYDLASLVKKAFSNVATISKGEAGFKATGIFPLNPNVFTDEDFVAAEVLQSEPNIVEDVDPTAVQPSAADFEQHSPPIPSTSRDFNQFTPEHTTVSTSTPELPLPITTKIQDFIQMPKKTLFLKTRQGRKKQHATLLTSIPIKDTLIEKENKKKAKNEKVKGKGIGKKSKPTAVLKATTAAKVKKRILRESNESSSSSEVKTDDLCQDDINDDVEDTGNQCLICGEFGKDKEMWYRCTSCGLWARSECTGWESARNYVCDNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00445096; iTF_00445097; iTF_01118251; iTF_01118252; iTF_01118253; iTF_01118254; iTF_01119279; iTF_00928628; iTF_00928629; iTF_00111606; iTF_00928630; iTF_00928631; iTF_00928632;
- 90% Identity
- iTF_00445096; iTF_00445097; iTF_01118251; iTF_01118252; iTF_01118253; iTF_01118254; iTF_01119279; iTF_00928628; iTF_00928629; iTF_00111606; iTF_00928630; iTF_00928631; iTF_00928632;
- 80% Identity
- -