Crub019133.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- clz9
- Assembly
- GCA_949152445.1
- Location
- OX424533.1:23612482-23617248[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-11 6.8e-08 33.4 0.0 2 40 26 64 25 68 0.92
Sequence Information
- Coding Sequence
- ATGGTGCGAACATATCAAAGGAAGTATACCAACTCACGCAATGGCAAAAGTCATCCACCATATCTGCGGTATTCTCAAGAAGATTTACAAAAAGCAATAGAAGCCGTTCAGAATGGTAATTTGAAAGTGAAAGACGCTGCAGAACATTACAATATTCCGATTAGTACTTTAAGCAGAAAATATAGACATAAAAATTGCACGCAAGAAAAAGCGGGGCACCCAACCCTATTTtcgaaagaagaagagaaatcGTTTGTAGAATATATTCAATTACTGAGCCACTGGGGGTTTCCTTTTGATTCAACTGACCTACGAATATTTGcacaaaaatacttaaataaaattggaaAAACCATATATGGACTAAAAGACAACATCCCCGGTGTAGACTGGGCGCGCAATTTCCTAATCAGACACAAACATGAGATTTCCAATCGGACAGCGTCAAACATATCTAGCGATCGCGCCAAAACTACAGAACAGGAAATAGATGAGTTTTTTGATCGTTACGAAAAATCTATCGAAGGAGTCTCCCCAGACTGTCTCATCAATTATGATGAGACAAACCTAACCGATGACCCGggtaacaaaaaatacattttcaagaGAGGATGTAAATACCCTGAAAGGGTAATAAATAGTTCTAAGTCATCAATTTCTTTGATGTTTGCTGGCACTGCAGATGGACAATCCTTGCCGATATATGTGGTTTACAAAGCGGATCATCTGTGGGATCAATGGTTGGAGGGAGGACCTGAAGGCACCAGATACAATAGGTCAAAAAGTGGCTGGTTTGATTCGGTATGCTTCGAAGACTGGTTTCATACGATAATAGTTCCGTACGCAAGAAAAAAACCAGGACGAAAAGTTGTAATAGGAGATAACTTGTCTTCTCATTTCTCACAATCTGTTCTACAGACTTGCAGTGAACTGAACATAACGTTTATTTGCTTACCTCCAAAAACTACGCATCTACTCCAGCCATTGGATGTGGCTTTTTACGCTCCTTTAAAAAGGTATTGGCGTGACGTATTAACAAAGTGGAAGAAGACAGAAGGATTAAAACATAAGACTCTAGTTAAAAGTTCATTTCCAAAGTTGTTAAAGAAATTGAAGAATAAGTTGGTAGAGAGTGGCACGGAATCCATTAACCTGATAGCCGGATTTAACAAATGTGGCTTATACCCCATAAATTCGGACCGACCCAAGTCACGGTTGCCACAAAGACAGATTATTCCAGAAGAAGAGATAGAGAACGCAGCATCTTCGGCTGTAATAGAAATTTTGCAAGAAATGAGATGTCCTACAAGTGCCACCGGACaaacaaaacgaaaaagaaaatgcAATGTACCACCCGGAATGAGTATTACAGCAGACGACATAGCCATAACCAAACCCCTCCAGcaacaaaaaaggaaaaatacacaAAAGCGAATGTCGGgcaaaaagaagaataaaaaatctttGACTATATCCAATTCCGATTTATCTGACAAAGACATGAGTAACACCGATTCTGATATCACCGGAGGATTTAAAAATGAAGAATCAAATTTGCTTGATACGCAGCCAATTGCTGGTCCTTCCGGGCTATGTAATGCCTATGCTTCTGGCTCCACATACGTAAGCTCAGATGATCAAAGTTCACAACATGAAAAGATTATAGAAACTAGAAAGAAACCAGCAACTAGAGAATATGTGTCTTTTAAAGGCAAGGGCAAGGGAaagaaaagtaaagtaaaaatagAAGAAAGTCAGCTGAATATTAgtgatttgaaaaataaaccaGCATCTGGTGAAAAACTATCTATTAAACGCAAAGGCAAGGGAAATAAAATTAGAccaaaactagaaaaaaaacagaTGAAGATaagtgatttgaaaaatttggaCTTGGATCCAGTAAGTATTCAACTATTGATAGCCAGTGTTAAAGCCGAGAAATCCAAAACCAAGAAAACGAAAAGAGATTCAAAAGATTCTGACACTACAAGTGTGTCAGATCTCATGAGTGTCCATAGTGACTCGGACATTATAGATGTTAATTTCAGTGAAAACAGCTCTGATGACAAGAGCAACGATGAAGGTTACGAATGTAACAAAGACATGAGTGACTGTACTTACATTAAACAGCCAACTGCAGAAAACAGTCAAATTCCTGACGATGATGATAAGATAATTGCTAGATCATATGTACCTGCTGGTTATGTTGAACAAAAGACTGATGGCAACATAACGACTAAGTTAGAATTCGAAACTGATAAGACTGACAACAATCCAAGAAATTTAGTAACGATATGTGATAATATAGATTTAGAAGAAGATTTAATAACGCTAAAAGATGAATCTGAAGTACATGAACTTTACTTTTACAATAATGAACCAACAGATACAAAAGACCTCCAAAATTCGAACATAAAAGTTTGCAAAATGTCATCTGTAAGATCATATGTAACTGCAGGTTCTATAAAACAAAAGACTTATGATAGCTTAAAGACTGCGCTAGAATATGGAATCTATAAGACTGATAAAAATGTGAGTACCTCAGCATTAATAAGTGAGAATATCGATTTGCCGGAACCTGAGATTTCAAAAGCTCATGAGTCCAATGATTCTCACCAAGAAAATGTGGATCCCTTGCAAATACAGAAAGACTTTGAACTGGATTTAGATATGTACTGTAATGAAAATGaccgaaattataataataccagGCAAGAACATGTAGAAAGCAATCAAGAACTTGAAGAACACAGGGGACAGAACTCCATCCAGATGTGTACCCCTGAAGCACCACAGCCTGAGTTCTGTTATCAATATAAGAGGAGAACCAACGATACAAATCTCCGTGTATTCCGGCATTGA
- Protein Sequence
- MVRTYQRKYTNSRNGKSHPPYLRYSQEDLQKAIEAVQNGNLKVKDAAEHYNIPISTLSRKYRHKNCTQEKAGHPTLFSKEEEKSFVEYIQLLSHWGFPFDSTDLRIFAQKYLNKIGKTIYGLKDNIPGVDWARNFLIRHKHEISNRTASNISSDRAKTTEQEIDEFFDRYEKSIEGVSPDCLINYDETNLTDDPGNKKYIFKRGCKYPERVINSSKSSISLMFAGTADGQSLPIYVVYKADHLWDQWLEGGPEGTRYNRSKSGWFDSVCFEDWFHTIIVPYARKKPGRKVVIGDNLSSHFSQSVLQTCSELNITFICLPPKTTHLLQPLDVAFYAPLKRYWRDVLTKWKKTEGLKHKTLVKSSFPKLLKKLKNKLVESGTESINLIAGFNKCGLYPINSDRPKSRLPQRQIIPEEEIENAASSAVIEILQEMRCPTSATGQTKRKRKCNVPPGMSITADDIAITKPLQQQKRKNTQKRMSGKKKNKKSLTISNSDLSDKDMSNTDSDITGGFKNEESNLLDTQPIAGPSGLCNAYASGSTYVSSDDQSSQHEKIIETRKKPATREYVSFKGKGKGKKSKVKIEESQLNISDLKNKPASGEKLSIKRKGKGNKIRPKLEKKQMKISDLKNLDLDPVSIQLLIASVKAEKSKTKKTKRDSKDSDTTSVSDLMSVHSDSDIIDVNFSENSSDDKSNDEGYECNKDMSDCTYIKQPTAENSQIPDDDDKIIARSYVPAGYVEQKTDGNITTKLEFETDKTDNNPRNLVTICDNIDLEEDLITLKDESEVHELYFYNNEPTDTKDLQNSNIKVCKMSSVRSYVTAGSIKQKTYDSLKTALEYGIYKTDKNVSTSALISENIDLPEPEISKAHESNDSHQENVDPLQIQKDFELDLDMYCNENDRNYNNTRQEHVESNQELEEHRGQNSIQMCTPEAPQPEFCYQYKRRTNDTNLRVFRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00038640;
- 90% Identity
- iTF_01246760;
- 80% Identity
- -