Alyc001158.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796847.1:21414104-21416981[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-11 1e-08 36.1 0.0 1 39 25 63 25 68 0.92
Sequence Information
- Coding Sequence
- ATGGTGCGAACATATCAAAGGAAGTATACCAACTCACGCAATGGCAAAACTCATCCACCATATCTGCGGTATTCTGAAGAAGATTTACAAAAAGCAATAGAAGCCGTTCAGAATGGTAATTTGAAAGTGAAAGACGCTGCGCAACATTACAATATTCCGATTAGCACTTTAAGCAGAAAATATAGATATAAAAATTGCACGCAAGAAAAAGCGGGGCACCCAACCCTATTTTCGAAAGAAGAAGAGAAATCGTTTGTAGAATATATTCAATTACTGAGCCACTGGGGGTTTCCTTTTGATTCAACTGACCTACGAGTATttgcacaaaaatatttaaataaaattggaaAAACCATATATGGACTAAAAGACAACATCCCTGGTGTAGACTGGGCGCGCAATTTCCTAAACAGACACAAACATGAGATTTCCAATCGAACAGCGTCAAACATATCTAGCGATCGTGCCAAAACTACAGAACAGGAAATAGATGAGTTTTTTGATCGTTACGAAAAATCTACCAAAGGAGTCTTCCCAGACTGTCTCATCAATTATGATGAGACAAACCTAACCGATGACCCGGGtaacaaaaaatacatttttaagagAGGATGTAAATACCCTGAAAGGGTAATAAATAGTTCTAAGTCATCAATTTCTTTGATGTTTGCTGGCACTGCAGATGGACAATCCTTGCCGATATATGTGGTTTACAAAGCGGATCATCTGTGGGATCAATGGCTGGAGGGAGGACCTGAAGGCACCAGATACAATAGGTCAAAAAGTGGCTGGTTTGATTCGGTATGCTTCGAAAACTGGTTTCATACGATAATAGTTCCATACGCAAGAAAAAAACCAGGACGAAAAGTTGTAATAGGAGATAACTTGTCTTCTCATTTCTCACAATCTGTTCTACAGACTTGCAGTGAACTGAACATAACGTTTATTTGCTTACCTCCAAAAACTACACATCTTCTCCAGCCCCTGGATGTGGCTTTTTACGCTCCTTCAAAAAGGTATTGGCGTGACGTATTAACAAAGTGGAAGAAGACAGAAGGATTAAAACATAAGACTCTAGTTAAAAGTTCATTTCCAAAGTTGTTAAAGAAATTGAAGAATAAGTTGGTAGAGAGTGGCACGGAATCCAATAACCTGATAGCCGGATTTAACAAATGTGGCTTATACCCTATAAATTCGGACCGACCCAAGTCACGCTTGCCACAAACACAGATTATTCCAGAAGAAGAGATAGAGAACGCAGCATCTTCGGCTGTAATAGAACTTTTGCAAGAAATGAGATGTCCTACAAGTGCCACTGGACAAACAAAACGAAAAAGGAAATGCAATGTACCACCCGGAATGAGTATTACAGCAGACGACATAGCCATAACCAAACCCCTCCAGgaacaaaaaaggaaaaatacacAAAAGCGAGTGTCGGGCAAAACGAAGAATAAAAAATCTTTGACTATATCCAATTCCGATTTATCTAATAAAGACATGAGTAACACCGATTCTGATATCACCGGAGGATTTAAAAATGAAGAATCGAATTTGCTTGATACGCAGCCAATTGCTGGTCCTTCCGGGCTATGTAATGCCTATGCCTCTGACTCCACATATGTCAGCTCAGATGATCAAAGTTCACAACATGAAAAGATTATAGAAACTAGTAACAAACCAGAAACTGgagaatatgtattttttaaaggCAAGGGCAAGAGAaagaaaaTAAGTATTCAACTATTGATAGCCAGTGTTAAAGCCGAGAAATACAAAAACAAGAAAACCAAAAGAGATTCAACAGATTCTGACACTACAAGTGTGTCAGATCTCATGAGTGTCCATAGTGACTCGGATATTATAGATGTTAATTTTAGTGAAAACAGCTCTGATGTCAAGAGCAATGATGAAGGCTACAAATGTAACAAAGACATGAGTGACTGTACTTACATTAAACAGCCAACTGCAGAAAACAGTCAAATTCCTGACGATGATGATAAGATAATTGCTAGATCATATGTACCTGCTGGTTATGTTGAACAAAAGACTGATGACAACTTAACGACTAAGTTAGAATACGAAACTGATAAGACTGACAACAATCCAAGAAATTTAGTAACGATATGTGATAATATAGATTTAGAAGAAGATTTAATAACGCAAAAAGATGAATCTGAAGTACATGAACTTTGCTTTTACAATAATGAACCAACAGATACAAAAGACCTCCAAAATTCGAACATAAAAGATTGCAAAATGTCATCTGTAAGATCATATGTAACTGCAGGTTCTATAAAACAAAAGACTTATGATAACTTAAAGACTGAGCTAGAACATGGAATCTATAAGACTGATAAAAATGTGAGTACCTCAGCATTAATAAGTGAGAATATCGATTTGCCGGAACCTGAGATTTCAAAAGCTCATGAGTCCAATGATTCTCACCAAGAAAATGTGGATCCCTTGCAAATACAGAAAGACTTTGAACTGGATTTAGATATGTACTGTAATGAAAAcgaccaaaattataataacaccaGGCAAGAACATGTAGAGAGCAATCAAGAACTTGAAGAACATGTAATGGAATCTGTATATGCTGTGAATGACCATGTTTTGGTGCGCTACTGTGAcggtaaaaaatgtaaatattatgttggatttattgaaaatattaaaattgatggACGTAAATATACACAGTAA
- Protein Sequence
- MVRTYQRKYTNSRNGKTHPPYLRYSEEDLQKAIEAVQNGNLKVKDAAQHYNIPISTLSRKYRYKNCTQEKAGHPTLFSKEEEKSFVEYIQLLSHWGFPFDSTDLRVFAQKYLNKIGKTIYGLKDNIPGVDWARNFLNRHKHEISNRTASNISSDRAKTTEQEIDEFFDRYEKSTKGVFPDCLINYDETNLTDDPGNKKYIFKRGCKYPERVINSSKSSISLMFAGTADGQSLPIYVVYKADHLWDQWLEGGPEGTRYNRSKSGWFDSVCFENWFHTIIVPYARKKPGRKVVIGDNLSSHFSQSVLQTCSELNITFICLPPKTTHLLQPLDVAFYAPSKRYWRDVLTKWKKTEGLKHKTLVKSSFPKLLKKLKNKLVESGTESNNLIAGFNKCGLYPINSDRPKSRLPQTQIIPEEEIENAASSAVIELLQEMRCPTSATGQTKRKRKCNVPPGMSITADDIAITKPLQEQKRKNTQKRVSGKTKNKKSLTISNSDLSNKDMSNTDSDITGGFKNEESNLLDTQPIAGPSGLCNAYASDSTYVSSDDQSSQHEKIIETSNKPETGEYVFFKGKGKRKKISIQLLIASVKAEKYKNKKTKRDSTDSDTTSVSDLMSVHSDSDIIDVNFSENSSDVKSNDEGYKCNKDMSDCTYIKQPTAENSQIPDDDDKIIARSYVPAGYVEQKTDDNLTTKLEYETDKTDNNPRNLVTICDNIDLEEDLITQKDESEVHELCFYNNEPTDTKDLQNSNIKDCKMSSVRSYVTAGSIKQKTYDNLKTELEHGIYKTDKNVSTSALISENIDLPEPEISKAHESNDSHQENVDPLQIQKDFELDLDMYCNENDQNYNNTRQEHVESNQELEEHVMESVYAVNDHVLVRYCDGKKCKYYVGFIENIKIDGRKYTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246761; iTF_01118214; iTF_01246760; iTF_00302031; iTF_00622736; iTF_01439835; iTF_00038636;
- 90% Identity
- iTF_01246760;
- 80% Identity
- -