Cpis023238.1
Basic Information
- Insect
- Ceramica pisi
- Gene Symbol
- Pdhb
- Assembly
- GCA_963859965.1
- Location
- OY982541.1:23575027-23604548[-]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.003 46 5.5 0.0 34 64 565 595 561 603 0.81 2 17 0.14 2.2e+03 0.1 0.0 38 58 612 632 597 638 0.74 3 17 0.16 2.5e+03 -0.1 0.0 39 58 642 661 631 667 0.73 4 17 0.0045 68 4.9 0.0 39 64 671 696 662 704 0.81 5 17 0.14 2.1e+03 0.2 0.0 38 59 713 734 698 740 0.74 6 17 0.14 2.1e+03 0.1 0.0 38 58 742 762 726 768 0.74 7 17 0.13 2e+03 0.2 0.0 38 59 771 792 754 798 0.74 8 17 0.17 2.5e+03 -0.1 0.0 39 58 801 820 791 826 0.73 9 17 0.14 2.2e+03 0.1 0.0 38 58 829 849 814 855 0.74 10 17 0.16 2.4e+03 -0.0 0.0 39 60 859 880 849 885 0.74 11 17 0.0034 52 5.3 0.0 38 64 887 913 867 923 0.81 12 17 0.0039 59 5.1 0.0 38 64 930 956 915 963 0.80 13 17 0.0038 57 5.2 0.0 39 64 974 999 958 1009 0.81 14 17 0.0038 58 5.2 0.0 38 64 1016 1042 1001 1050 0.80 15 17 0.0037 56 5.2 0.0 38 64 1059 1085 1043 1093 0.80 16 17 0.14 2.2e+03 0.1 0.0 38 58 1102 1122 1087 1128 0.74 17 17 0.21 3.2e+03 -0.5 0.0 39 56 1132 1149 1123 1157 0.74
Sequence Information
- Coding Sequence
- ATGAAAATGGCGTTGAAATCGTCGCCGGTTATCTTCGGGTGGCTCTCTCGGTTGCCTCGTAGTTTTTCAACATCTAGCGCCTTAGCTGCGAAGCCTATGACTGTGCGTGATGCTATCAACAGTGCTATTGACGAGGAGATGGCGAGAGACGACAAGGTGTTCATATTGGGCGAGGAAGTGGCCCAATACGATGGTGCCTACAAAGTGACCAGGGGCCTATGGAAAAAGTATGGAGACAAGAGAGTAATAGACACACCAATCACAGAAAGCGGTTTTGCCGGTATTGCGGTTGGTGCTGCATTTGCTGGTCTTCGGCCAATCTGCGAGTTCATGACATTCAACTTCTCCATGCAGGCTATTGATCAGGTAATAAACTCAGCAGCGAAAACGTTCTACATGTCAGCCGGTCAAGTGCCGGTGCCCATCGTGTTCCGCGGACCCAACGGGGCGGCGGCGGGCGTGGCGGCGCAGCACTCGCAGTGCTTCGGCGCGTGGTACAGCCACTGTCCCGGACTCAAGGTGCTCATGCCCTACACCTCCGAGGATGCTAAAGGTCTCCTAAAGTCCGCCATCAGAAGTTTAGACCCAGTGGTAGTGTTAGAAGATGAGATTCTCTACGGTGTCCAATTCCCCATGTCTGACGAGGCACTCTCACCAGACTTCCTTATTCCAATTGGTAAAGCTAAGATCGAGCGGGAAGGCAAGCACGTGACCTTGGTGTGCGCCGGCAGAGGCACGGACACAGCTCTGCAGGCTGCCAAGGAACTCGCCGGAAAGGGTATCGAGTGCGAGGTGATCAACCTGCGCTCCATCCGGCCGCTAGACTTCGACACCATCGCGCGCTCCGTCGCCAAGACGCACCACCTCGTCACGGTGGAGCAGGGCTGGCCGCAGTCAGGTAACCAAACATTTtgtataacactagctgacccacgcaagaCGCACCACCTCGTCACGGTGGAGCAGGGCTGGCCGCAGTCAGGTAACCAAACATTTtgtataacactagctgacccacgcaagaCGCACCACCTCGTCACGGTGGAGCAGGGCTGGCCGCAGTCAGGTAACCAAACATTTtgtataacactagctgacccacgcaagaCGCACCACCTCGTCACGGTGGAGCAGGGCTGGCCGCAGTCAGGTAACCAAACATTTtgtataacactagctgacccacgcaagaCGCACCACCTCGTCACGGTGGAGCAGGGCTGGCCGCAGTCAGGTAACCAAACATTTtgtataacactagctgacccacgcaagaCGCACCACCTCGTCACGGTGGAGCAGGGCTGGCCGCAGTCAGGTAACCAAACATTTtgtataacactagctgacccacgcaagaCGCACCACCTCGTCACGGTGGAGCAGGGCTGGCCGCAGTCAGGTAACCAAACATTTtgtataacactagctgacccacgcaagaCGCACCACCTCGTCACGGTGGAGCAGGGCTGGCCGCAGTCAGGTAACCAAACATTTtgtataacactagctgacccacgcaagaCGCACCACCTCGTCACGGTGGAGCAGGGCTGGCCGCAGTCAGGTATCGGTGCGGAAATCTGCGCGCGCGTCATGGAGTCTCCATCGTTCTTCGAGCTGGATGCGCCTGCATGGAGAGTGACCGGTGCTGACGTACCCATGCCGTACGCGCGCTCGCTGGAAGTGCTGGCCATACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAATGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAATGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAATGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAATGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAATGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAATGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAATGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACAcacatactatactatactataccatACCGCGCAGTGACGACGTGCAGGCTGCAGTAACCGCCGTGCTCGGCAACAAGTTAGTACACACACATACTATACTACACTATACCATGCCGTACGCTCGCTGGAAGTGCTGGCCATACCAGGAGCTAGTGATATCGTGA
- Protein Sequence
- MKMALKSSPVIFGWLSRLPRSFSTSSALAAKPMTVRDAINSAIDEEMARDDKVFILGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPITESGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQVINSAAKTFYMSAGQVPVPIVFRGPNGAAAGVAAQHSQCFGAWYSHCPGLKVLMPYTSEDAKGLLKSAIRSLDPVVVLEDEILYGVQFPMSDEALSPDFLIPIGKAKIEREGKHVTLVCAGRGTDTALQAAKELAGKGIECEVINLRSIRPLDFDTIARSVAKTHHLVTVEQGWPQSGNQTFCITLADPRKTHHLVTVEQGWPQSGNQTFCITLADPRKTHHLVTVEQGWPQSGNQTFCITLADPRKTHHLVTVEQGWPQSGNQTFCITLADPRKTHHLVTVEQGWPQSGNQTFCITLADPRKTHHLVTVEQGWPQSGNQTFCITLADPRKTHHLVTVEQGWPQSGNQTFCITLADPRKTHHLVTVEQGWPQSGNQTFCITLADPRKTHHLVTVEQGWPQSGIGAEICARVMESPSFFELDAPAWRVTGADVPMPYARSLEVLAIPRSDDVQAAVTAVLGNNDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNNDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNNDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNNDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNNDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNNDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNNDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNKLVHTHTILYYTIPRSDDVQAAVTAVLGNKLVHTHTILHYTMPYARWKCWPYQELVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -