Cpis013841.1
Basic Information
- Insect
- Ceramica pisi
- Gene Symbol
- Rfx2
- Assembly
- GCA_963859965.1
- Location
- OY982534.1:22876373-22908629[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.2e-37 7.3e-33 114.3 0.0 3 78 207 282 205 283 0.97 2 15 0.27 6.1e+03 -0.8 0.0 25 54 1017 1054 1014 1059 0.73 3 15 0.24 5.5e+03 -0.6 0.1 25 54 1053 1090 1043 1096 0.76 4 15 0.26 5.8e+03 -0.7 0.0 25 54 1089 1126 1082 1131 0.75 5 15 0.26 6e+03 -0.8 0.0 25 54 1125 1162 1121 1167 0.74 6 15 0.26 5.9e+03 -0.8 0.0 25 54 1161 1198 1157 1203 0.74 7 15 0.25 5.6e+03 -0.7 0.1 25 54 1197 1234 1191 1242 0.75 8 15 0.24 5.4e+03 -0.6 0.1 25 54 1233 1270 1221 1275 0.76 9 15 0.26 5.9e+03 -0.7 0.1 25 54 1269 1306 1265 1312 0.74 10 15 0.25 5.7e+03 -0.7 0.1 25 55 1305 1343 1302 1353 0.74 11 15 0.22 4.9e+03 -0.5 0.1 25 55 1341 1379 1331 1394 0.75 12 15 0.24 5.4e+03 -0.6 0.1 25 54 1377 1414 1364 1419 0.76 13 15 0.26 5.8e+03 -0.7 0.0 25 54 1413 1450 1407 1455 0.75 14 15 0.26 5.9e+03 -0.8 0.0 25 54 1449 1486 1445 1491 0.74 15 15 0.26 5.9e+03 -0.7 0.0 25 54 1485 1522 1480 1527 0.74
Sequence Information
- Coding Sequence
- ATGTCTGAGATGGGCTTTGAGAATGTTTTCTATTTAGAGAACTTTGAGTGCGCGGGCGACGAGGTACTGGTGGAGTCGTCGCCGCCTGCTTCCCCGGACATGGCAGCGCGGCTCGCGGCTCCTGCACAGGGTGGCGCGGGCGGCGGTGCCTCACCGAGCGCCGTCCGTGATCTCATCGTAATACCGGAAATACCCGACTCCATGCATTTGCAGCACGCTATTCAACAGGTGTCGAGTACGGTGGTGGAAGTGAACGGCGACAGTTCGGGCCACTCCAGCCCTACGGCGGAAGGGCAGCACACCTACATCACCGTATCGAGCGAGTGCGAGGGTGGGAACGGCGTCAACTATCATGTGCAATATGTTACGGAGCCGCAGGAGATCTACACACAAGGTCACCCGACGCATATGGATTCCTTGCGCTCGTATCCAGTGTACGGAGTGACTACGGTGGGCAACGGAACGAGCGCCGAAGGCACGTCTGCAGACAACGGCTGGGGCGGAGCTTCCTCGGCCGAGTACACCGCTTATGGCGTCGTGGTGGCCGGCGACGAGGCGGAGGCGCCGGCGTCCCCGGCCACGCCGGCCGGCGCGCCCGCAGCGCCGCGCATGCCGCCCGCCACGGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAGGGCGTGTCCCTCCCGCGCTCGACCTTGTATGCTCACTACCTGCGCCACTGCGCCACGCACCGCCTCGAGCCGGTCAACGCGGCCTCCTTCGGCAAGCTCATCCGCTCCGTCTTCATAGGCCTTCGCACCAGGAGACTTGGAACCAGGGGGAACTCCAAGTATCACTACTACGGGATCAGGGCGAAGCCCGGTGTCGAACATGACCATAGTGAGAGCGATCTGAATGAACAGCAGGACAATGTGGATGATAAAACCGATGTTTTGGATCATCAGGAGGGCAGATCACGCGATCGTTCCCGCGAATCGACCAGCAGTCCTAACCACGCACACCGCCAGTACTTGGGCTCCGTGTCGCCTCCCGAGCCGCCGCCTCTCGCCATACACCCGCTGCCCGAAGACGTGTCACCCGAATCATTGAACGCTTTGAGGAGACATCACAGGGAGCACGGCGCGGAGTTCCTGTCGGCGGTGGCGGCGCTGGACACGGCCGCGGTGgagcgcgcgcgccgctcgTTCTGGCGCAGGCCGCCGGCCGCGCTGTCGCGCCGCGACCTGTGCCGCCTGGCCGCCCGGAGAGATGTGGCCGCCTGGCTGCGCGCCGCCGAGCTGCAGCTGTACCAGCGCGCCGTCGAGCTGCTGCTGCCGGACGTGCTGCGTCCCATCCCGCCGCAGCTCACCCAGGTACTCACACTACTGTGCCGCCTGGCCGCCCGGAGAGACGTGGCCGCCTGGCTGCGCGCCGCCGAGCTGCAGCTGTACCAGCGCGCCGTCGAGCTGCTGCTGCCGGACGTGCTGCGTCCCATCCCGCCGCAGCTCACCCAGGTACTCACACTACTGTGCCGCCTGGCCGCCCGGAGAGACGTGGCCGCCTGGCTGCGCGCCGCCGAGCTGCAGCTGTACCAGCGCGCCGTCGAGCTGCTGCTGCCGGACGTGCTGCGTCCCATCCCGCCGCAGCTCACCCAGGTACTCACACTACTGTGCCGCCTGGCCGCGCGGAGAGACGTGGCCGCCTGGCTGCGCGCCGCCGAGCTGCAGCTGTACCAGCGCGCCGTCGAGCTGCTGCTGCCGGACGTGCTGCGTCCCATCCCGCCGCAGCTCACCCAGGTACTCACACTACTGTGCCGCCTGGCCGCCCGGAGAGACGTGGCCGCCTGGCTGCGCGCCGCCGAGCTGCAGCTGTACCAGCGCGCCGTCGAGCTGCTGCTGCCGGACGTGCTGCGTCCCATCCCGCCGCAGCTCACCCAGGTACTCACACTACTGTGCCGCCTGGCCGCCCGGAGAGACGTGGCCGCCTGGCTGCGCGCCGCCGAGCTGCAGCTGTACCAGCGCGCCGTCGAGCTGCTGCTGCCGGACGTGCTGCGTCCCATCCCGCCGCAGCTCACCCAGGTACTCACACTACTGTGCCGCCTGGCCGCCCGGAGAGACGTGGCCGCCTGGCTGCGCGCCGCCGAGCTGCAGCTGTACCAGCGCGCCGTCGAGCTGCTGCTGCCGGACGTGCTGCGTCCCATCCCGCCGCAGCTCACCCAGGTACTCACACTACTGTGCCGCCTGGCCGCCCGGAGAGACGTGGCCGCCTGGCTGCGCGCCGCCGAGCTGCAGCTGTACCAGCGCGCCGTCGAGCTGCTGCTGCCGGACGTGCTGCGTCCCATCCCGCCGCAGCTCACCCAGGCTATCCGCAACTTCGCGAAGAGCTTGGAAGGCGCCctggcggcgggcgcgggcggcgcccCCGCgctggcggcgcgcgcgcaggcggcggcggcggcggcgctggcggCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCAACAACCACCACCAGATACACCAGATGATCGCGGACCTGAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCCGCCTGGGCGTGCTCGTGCGGCAGCGCCGCCACCGCGCACAAACTGGAAACTGACTTCAAGGTATATTATACTTTATACTTCCGCGTGGTGCGCGAGCAGGCCGCCTGGGCGTGCTCGTGCGGCAGCGCCGCCACCGCGCACAAACTGGAAACTGACTTCAAGGTATATTATACTTTATACTTCCGCGTGGTGCGCGAGCAGGCCGCCTGGGCGTGCTCGTGCGGCAGCGCCGCCACCGCGCACAAACTGGAAACTGACTTCAAGGCTACATTAGGGCGAGGAGCGTCCCTGGAGCAGTGGGCGGGCTGGCTGGAGGGCTGCGTGCGCACGGCGCTGGCGCCGCACGAGCGCCGCCCCGACTAcacggcgcgcgcgcgccgcctgcTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCAGGGAGCTCACTCTCAGGTCAGCGGCATCGTTCGGCTCGTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCAGGTGGCCGCGCACCACAACGCGCCGCCCATCGCCGTCATGCAGAGGGCCTTCGAACAAGACGAAGAAGACATCCCCGAGGAGCCGCCGCGGGAGACAGATGACGACGACCAGGACTGGGAGTGGGACGATGACGACGACGAGGACGACGAGCCCGACGGGAAGAGGGCCAGGGGGGGGAACGAAGAGCTCTAG
- Protein Sequence
- MSEMGFENVFYLENFECAGDEVLVESSPPASPDMAARLAAPAQGGAGGGASPSAVRDLIVIPEIPDSMHLQHAIQQVSSTVVEVNGDSSGHSSPTAEGQHTYITVSSECEGGNGVNYHVQYVTEPQEIYTQGHPTHMDSLRSYPVYGVTTVGNGTSAEGTSADNGWGGASSAEYTAYGVVVAGDEAEAPASPATPAGAPAAPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCATHRLEPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKPGVEHDHSESDLNEQQDNVDDKTDVLDHQEGRSRDRSRESTSSPNHAHRQYLGSVSPPEPPPLAIHPLPEDVSPESLNALRRHHREHGAEFLSAVAALDTAAVERARRSFWRRPPAALSRRDLCRLAARRDVAAWLRAAELQLYQRAVELLLPDVLRPIPPQLTQVLTLLCRLAARRDVAAWLRAAELQLYQRAVELLLPDVLRPIPPQLTQVLTLLCRLAARRDVAAWLRAAELQLYQRAVELLLPDVLRPIPPQLTQVLTLLCRLAARRDVAAWLRAAELQLYQRAVELLLPDVLRPIPPQLTQVLTLLCRLAARRDVAAWLRAAELQLYQRAVELLLPDVLRPIPPQLTQVLTLLCRLAARRDVAAWLRAAELQLYQRAVELLLPDVLRPIPPQLTQVLTLLCRLAARRDVAAWLRAAELQLYQRAVELLLPDVLRPIPPQLTQVLTLLCRLAARRDVAAWLRAAELQLYQRAVELLLPDVLRPIPPQLTQAIRNFAKSLEGALAAGAGGAPALAARAQAAAAAALAAALRRYTSLNHLAQAARAVLNNHHQIHQMIADLNRVDFRVVREQAAWACSCGSAATAHKLETDFKVYYTLYFRVVREQAAWACSCGSAATAHKLETDFKVYYTLYFRVVREQAAWACSCGSAATAHKLETDFKATLGRGASLEQWAGWLEGCVRTALAPHERRPDYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFFHLIRLLYDEYVSYLIERQVAAHHNAPPIAVMQRAFEQDEEDIPEEPPRETDDDDQDWEWDDDDDEDDEPDGKRARGGNEEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -