Cdis001286.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756358.1:24423069-24424196[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.49 1.3e+03 0.0 0.0 20 51 168 199 161 201 0.79 2 7 0.013 35 5.0 0.3 23 44 199 220 190 224 0.91 3 7 0.35 9.2e+02 0.5 0.0 22 43 226 247 221 253 0.83 4 7 0.027 72 4.0 0.2 21 46 253 278 246 284 0.83 5 7 0.0024 6.4 7.4 0.1 21 52 281 312 274 314 0.85 6 7 0.044 1.2e+02 3.3 0.5 23 44 311 332 306 337 0.88 7 7 1.9e-06 0.005 17.3 0.2 21 44 337 360 334 364 0.91
Sequence Information
- Coding Sequence
- ATGTCGGAGGCGGGGGACAGGGTGAAGCAGGAGGGGGGTGAGGGTCATATAGAAGTGGAGGTGGAGAGTATGGAAGTGTTCAGACGGAAGTACGAGTATGGAGCAATACTGAGGAAAGCTTTAACTCGTGTGGGAACGGAGCAGTCATCTCCGGGAAGTATTAAGGTTGAATTTGATTCCGTTTCCAGACGTCGTAACGTGAAACACGAACCAGAGGAGGATGGTGAAGTCATCTACCATGACGAGGATACGGATGACGATTATTCGTACGTAGAACCAACACACACATCTAGTCACATAGCAAATAAGAATATACACGGCTTCCCTGGGACGTCTCAGGTGGGGTGGAGTCTCCCTGCTGTGGAGAGGGAAGACGTGTGTGGAGCCTCGGTGTATGCAGACGAGTGTTATCAAGACGAAGACCAAATGTCGTTTCAATGCAACGATTGTCTTAAAAAATTCACCACATTCCATTCCCTGAAGCAACACAGGGTGGTACACAGCAATGAGAAACCGTTTAAGTGCGACGAGTGCGGGAAGACATTTGCGAGGAAAGGTGATTTACAGAGACACAAAACAATTCACACGGGAGTCAAGCCGTACCAGTGTAGTCTGTGCTGTAAGACCTTCAGGGAGTCCTCCAAACTGAAGAATCACTTGGTGAGCCACAGTGGGGAGAAGGCCTACGAGTGCAGCGTCTGCCTTAAGAAGTTCACTCTCTCCACTAATCTCATgaaacataaactaattcacacggGGGAGAAGCCCTTTGAATGCGACATTTGTTTGAGAAGGTTCCGGCAGCTCTCCTGTTTAGCGACGCACAAATTCCTCCACAGTGGCGAAAAACCATTTCAGTGTCAAATCTGTCTCCAGAGATTCACGCAGTCGTCTAGTTTGATGAAGCACAAGTTGACTCACTCGGGGGCCAAGCCCTATGAGTGTGCCACGTGCCTGCGGCGCTTCAGGCAGACGTCTAGTCTCCGGGTGCACGTGTTGACTCACAGCGGGGAGCGGCCCTTCAGGTGTGCCGTGTGCTTCAAGTCTTTCAGACAATCCTCTAATTTAACTCGCCACATGACGAGTCATAAGGAATCTCAAGAGGATGAGACGACTCCCCACAAATAA
- Protein Sequence
- MSEAGDRVKQEGGEGHIEVEVESMEVFRRKYEYGAILRKALTRVGTEQSSPGSIKVEFDSVSRRRNVKHEPEEDGEVIYHDEDTDDDYSYVEPTHTSSHIANKNIHGFPGTSQVGWSLPAVEREDVCGASVYADECYQDEDQMSFQCNDCLKKFTTFHSLKQHRVVHSNEKPFKCDECGKTFARKGDLQRHKTIHTGVKPYQCSLCCKTFRESSKLKNHLVSHSGEKAYECSVCLKKFTLSTNLMKHKLIHTGEKPFECDICLRRFRQLSCLATHKFLHSGEKPFQCQICLQRFTQSSSLMKHKLTHSGAKPYECATCLRRFRQTSSLRVHVLTHSGERPFRCAVCFKSFRQSSNLTRHMTSHKESQEDETTPHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00299411;
- 90% Identity
- iTF_00299411;
- 80% Identity
- iTF_00299411;