Cdis000862.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756358.1:16200952-16202529[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0013 3.3 8.3 0.1 22 44 197 219 188 228 0.84 2 8 0.99 2.6e+03 -1.0 0.0 22 44 225 247 222 251 0.84 3 8 0.016 41 4.8 0.0 22 43 253 274 249 279 0.85 4 8 0.002 5.4 7.6 0.0 21 43 280 302 277 307 0.92 5 8 0.34 9.1e+02 0.5 0.3 22 37 337 353 334 362 0.72 6 8 3.7e-05 0.099 13.2 0.4 20 43 363 386 357 395 0.88 7 8 1.4 3.6e+03 -1.4 0.0 24 44 420 440 413 444 0.80 8 8 1.3 3.5e+03 -1.4 0.0 21 43 473 495 466 501 0.79
Sequence Information
- Coding Sequence
- ATGATGGAGGTATCTAATAATTCTGAGAAGAAGAATGTACAAGATTTGGATATGAAAGAAAGCCAAGATGCAAATTCTAGTGGCAAATACACAAAGgaagatgatgaagaagaagaatggagTGAAGAAAGTGAGTATGATAGTGATACTGATGAATATCAAGTGATTGGTAGAGAGCCTGGGGAAATAGTCGATGGAGTCGAACCTGGAGAAATAATAAACCTGCAAAATAACCAACCAGGAAATTTTCAACAAGTTTTTGTCGAAGAGAAAAAAACTATGGAATTACCAgttagtgaaataaaaacagAACCTCAAGATGAACCTCCGGAGGAAACAGATGGTGGTGGAGTTTATATGTGCTATGATGTTGATGTTACTTTTGAACCAGAAGTTAattcaaaaaagaaaaagagaAAATCCAAACACGGGCTATCCACATTGCCTGGAACGTCTAAAACCGGACAGTTAACACCtgcgaaaaaaaaaagaaagcgaTATGTTAAACGAATATACAATTGCGATATATGTGAGATGACATTCGATAAATTCCAACAGATGAAAAATCACAAGGCGGAACACGTAGAAGAAAACAGCTTTCAGTGCCCCATTTGTCTGAAAGAATTCTCTCGTAAGAGAAATCTGATTCGGCATAATTGGGTTCACACGGGGGAGAAACCATTCAAGTGTGAACTATGTCCTAAAACATTCACGCAAGTGGGACATTTAAAGTTACATATGCTAACTCATAGCGGACAGGAACCATTTCAGTGTGATATATGCTTTAAGAAATTTACTCAGAAACATAATTTAGACGCTCACAATTTAACACACAGCGGAGAGAGACCCTTTAATTGCGATATATGTTTTAAAAGTTTCCGAGAAATGGGGCATTTGAAAAGGCACAGGTTCACTCACACTGGAATAAAGTTGTACGGCTGTGAGGAATGTGATAAAAAGTTTACGCAAAGAGGAAGtttgaaaatacataaattaatacacGCGGGGGAGAAGCCATTCCAGTGTGAGATTTGTATGAAGTGTTTTATTAGGAAAGATAAACTGAATGTTCATAGATTATGCCATAGTAGTGAGAGGCCTCATACTTGTTCTATATGTAACATGATGTTCAGAGAAATGTCTAGTCTAAATAGACACAAGTTGGTTCATATAAAGGAAGGATTCACTTGTGCCATTTGTATTGATAATCAAGGGATGGGACTTTGCGATCACAACACTGTACAAAGTGACATGTTGCCGTATCAGTGTGAAGTTTGTATGAAGAAATTTGCAAAAAAAGAGAGTCTGGCTCGTCATGTTTTAACTCACACCAGACCAAAATTGTACGAATGTAATGTATGTTCCAAGCGTTTTGCTTTGTCCGGACACTTGAAGGTGCACAAGACAACGCACAGTGGGGAAAAACCTTATGAGTGCGATCTTTGCGGGAAGAAATTCTCACGAAAGGATAATTTAAACTCCCATAAGTTGGTTCATATAAAGGCCAGTGCCAGACTTCCCATTGTTCAAGATATAAGTGAAAAAGTTCTATCAGAATTGTCTGGTAAAACAGAATAG
- Protein Sequence
- MMEVSNNSEKKNVQDLDMKESQDANSSGKYTKEDDEEEEWSEESEYDSDTDEYQVIGREPGEIVDGVEPGEIINLQNNQPGNFQQVFVEEKKTMELPVSEIKTEPQDEPPEETDGGGVYMCYDVDVTFEPEVNSKKKKRKSKHGLSTLPGTSKTGQLTPAKKKRKRYVKRIYNCDICEMTFDKFQQMKNHKAEHVEENSFQCPICLKEFSRKRNLIRHNWVHTGEKPFKCELCPKTFTQVGHLKLHMLTHSGQEPFQCDICFKKFTQKHNLDAHNLTHSGERPFNCDICFKSFREMGHLKRHRFTHTGIKLYGCEECDKKFTQRGSLKIHKLIHAGEKPFQCEICMKCFIRKDKLNVHRLCHSSERPHTCSICNMMFREMSSLNRHKLVHIKEGFTCAICIDNQGMGLCDHNTVQSDMLPYQCEVCMKKFAKKESLARHVLTHTRPKLYECNVCSKRFALSGHLKVHKTTHSGEKPYECDLCGKKFSRKDNLNSHKLVHIKASARLPIVQDISEKVLSELSGKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00299352;
- 90% Identity
- iTF_00299352;
- 80% Identity
- iTF_00299352;