Cdis013240.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756371.1:104947-109276[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.32 14 6.7 2.4 1 23 753 776 753 776 0.91 2 13 0.077 3.5 8.7 0.4 2 23 900 921 899 921 0.96 3 13 1.2e-05 0.00053 20.7 1.3 2 23 924 945 923 945 0.96 4 13 0.0025 0.11 13.4 1.5 1 23 951 973 951 973 0.97 5 13 0.0011 0.05 14.5 4.1 2 23 980 1001 979 1002 0.95 6 13 0.17 7.8 7.6 2.1 5 23 1015 1033 1013 1033 0.96 7 13 4.7e-05 0.0021 18.8 1.7 3 23 1040 1061 1039 1061 0.97 8 13 0.013 0.57 11.2 1.7 2 23 1074 1094 1074 1094 0.97 9 13 1.7e-05 0.00076 20.2 3.2 1 20 1100 1119 1100 1122 0.92 10 13 0.0034 0.15 12.9 1.2 1 23 1130 1152 1130 1152 0.99 11 13 0.017 0.78 10.7 7.3 1 23 1158 1180 1158 1180 0.98 12 13 7.9e-06 0.00036 21.2 0.7 1 23 1186 1210 1186 1210 0.96 13 13 0.00045 0.02 15.7 4.4 1 23 1216 1238 1216 1239 0.95
Sequence Information
- Coding Sequence
- ATGGAAAGTACAGTACAGTGTCCAGTATGCACTCTCTACCTGCACGAGGGGATGGCATTGAGTGCCCATCTAGACACTCACCCCAAGGATCAGGTGATCAGTGCCTTGTGCAGTCTGGCTGTGCCTTCTTCCACAGTACCAGCGCCCGCCGCCCCATCGGCTCCCACTCAGACTTCCCCGCTTACTTTCTCCACTCCTTCCTTGTCCTCCACTCCGGCGCCTCCTCCATACACCCACTTGGAACATGCGCACCGCCCTCGCCCCCGGGCCCCCTACACCCCCGCCCCCACGCCCTCCACTACTCCCCTCTCCTTCTCCACAGACCATCCTCTATACTTCCTCCCCCAGCCCCCCCGCACTTACTCCAGGCACGGGGACACTAACTCCTTTGTGTTAAATAACAAGTTCCCAGATAATGATGGCCTCATCATGGCTTTTGTTCAGCCTCCTATAGTGGCTGAGCAGGAGTTACTGAATATTCCGCCACATCAGCAATATGATACTAAGCCTCCCATGCACTTGGTTATGCCCGTCAAGACAACACCGCCATCCATGTTCTACAAACAGTTGACTCATCAAGTGAGCGTCAAGAAATATGTGTCGGCTGTACCTCTGCCTCTGCGCTCCGAGGACCAAGGGGTGGTGGTGGTGGTGGGGGGAGCCGGGGAGTCCTCTCAGCCCCCCCGGGGCTCCAGCAGCACTGCGGATGTGAGTAAGGGAGATAGCAACACGTGTTCCTCTTCCAAGTCGGGTGTCAAGATCCTTAGTAATATTAAAGTGGAGCTGCCCATCCAAAGTATTCCGGAGATAATTGATTTGACCTCATCTCAGCATCGAGCTCAGCGTCCTGATTTGCAAGAAGATGAAGCCATCCTACCAGACTTTGTAGATGCGGAGATGTGCCACAATTATACACAGACTAGATTCACCAGAGAACATTACACCTCCAAGCCGTGTACATCCTCCCCACACAAGTTAGTACAGACCAGCGCAGCGGGGTCCAGTGTAGTCAACACATTCTCCGTTATTAAGAATATAGGGAACCCTAATCTGTATAAAGACACGTCACATAGTGAACACAGTGAAGAGAATAAAGGAAGTGATAACTCCATACTGCCAGACTTGACATGTAATGAGAATCCTTCCATATCTCCATGTAGTGAACTCACTAATGACTCCAATGAGGCTCTGTATGACAGAATGTCTGGAGGAAGATCTCTGCGTGTCCCCACTACTCCAATAGCAATGTACCAGAATAGATTCTCTACTTGTGAGACTCCCACCACTGTCAGCTCTCCCAAGACTAACATGTTTGACAAAAATCAAAGCAAGACTTTGACAATCATCCCGCCGGCGAGTAGCGAGTGCCCCTGCCCCTGCCCGTCTTCCAACAACTTCAATATCAACATAGACGTCTCCAGGGTGCAGGACAGTGAGTGTAGTAATGACAAGTGTGATACGCCGAGTGAGCCTCAGGACACAGCAGGGAGACTAGATGGATTCTTCAAGGAGTTTGAGAGGAATAAACaacaatgtaaaataaataataattctagcGAATGTAAATCTATACTCTCTTCTATAGAAGATGAAGATTCTGTAAGTTGTGGAGATATCTCAAAGGACTTACCAGAGGATTCTATGGAGAATACTTTCAATTCTAATTTCAAGACCTGTTTGTCTGAAAGAAATGAGAATTTAAAAAGTAGCATGGACGAGTGCGCCATGGGAGTGGATAAGTTATTAGACAATCTCTCGCAGAAGAGTTACACGGAGATGGAGAACATGAGGCCAGTGAATGTGATAGCGTTTGGTAGCATGGTGGGCGGGGCCCCGGGGGAGACGCACGCCTCCACCTCCTACCAGGACGTGTCCAAGTCAGACTGCAGCAGCATGATGATGCAGTGGGAGGCGGCCAACTTCATGGACTTAGGGCAGACTCCGTACGGACGAGGGACGGCTCAGCCCAGCACAGATGGGGAGGGACTGCAGAGTTACACGGAGTTAGCCACTGCGGGAAGTAAATGTTGTACCACCACTGAGGAGGCGGGGAGGACGGAGCTGTCTGAGCAAGACACACCATGGCCTGGGATGTACTGTGATGTAGGAGGCTCCACTTCATATGATCTCCTGGCTAGAGAGACTTGGCACTCAGATGGCTCTGATGTTGATATGCCAGTCACTCCTGTTAAGGATACTTAtaaTGATGCAGAAGATATTCCAATAGTAGTTGGAGTGAAGCCTCCTGAGAGGAACTACCGCTGCGGCTCGTGCGGGAAGACCTTCAATTGCCCCAAAGAGAGGAGAGTGCATCGAGCCAAGGACCATCCCGCCCCCCAGGGAGAGGAGCAGTCCCCGCATCCCTTGCAGCCCAGACAACTGGACATCCACTCGCCACAGCATGAACAGCAACACACAATTACAGTTAGGAAGAGTAAAAAGAAGCCATCTGGAAGTTCCACTGCTCTCCTTAAACCAATTCAAATCAAGAATGAGATTGTGAAGACAGaaattataacaaataaattaaaagaagAAGTAAACAATGCAAGTGGTGTTGGTGTAGTGGAGGGGGCAGTTATACCAGGAATACCAGGGATCAACTTTGAGGACAAGAAGCCCAAGCTGGAGGATGTTGTGGTGGGGGAGGGGGTGGCGGACGCAGAGAGGAGAGACAAGAAGAGGAAGAGGGACTGGGTGTGTGGCACCTGCAAAGAGGACTTCCCGGGCCAGCAGGAATACAACCACCACCTCAAGGAGCATCCCCTGGAGTGCCTCACTTGTGGCAAGTACTTCTACAGGCGCTCCAACTTACAGCTGCACATCAAGAGACATCTGGGGATAAAGAATTACAAATGTGACGTGTGTGAGAAGAGATTCATCACCAAGCAGAAGATGTTAGAGCATTACTATATCCACACGGGGAACACTCCCATCAAGTGTGGCCTCTGCCCCGAGACCTTCCGCAGACATTCCAACATGGTGCAGCATCGTAACAAACATCACTTCCTTCTCAAGAAGAAACTCCGAGACTACGTGTGCCACTGCGGGGAAGTATTCCATACCAAGAAGAAACTGGCCTGGCACAAGGAAGTCCACGAGGAGAGACCTAAGGCCTGTCCACATTGCAGCGAGAAGTTCATTCACGCCGCCTCCCTCTCCCGCCACATGAGGCGCGCACACAACACTCTATTCACACAAGCCGAGGGCGGCAACGCCGAGTGCAGTATCTGCCACCAGGTGTACCTGAGGACCTCCCTGGAGAGTCATATGCGCACCCACGCAGGCTCCCGCCCCTACTCCTGCCACATCTGCAACAAGTCCTTCACTACCAAATGGAATCTCAAGTTACACAGGTGGACTCACGCCAACCGCTCCAGTAAACCCTACAAGTGCTCCCTGTGCAAGGGGGCCTTCATCCGCCACGCAGACTACGTGTCCCACATGAACTCCCACAAGTCGGTGCGGCCGTACACCTGCAACTACTGCGGCTGCCAGTTCATCAGGAAGTACAACTGCCAGAGACACGTGAAGGAGCATGAGAATGATAAGAAGTTTGCCTGTCAGGTGGCGGACTGTGGGAAGAGCTTCCACCGTAGTTATTATCTGGCGGAGCACATGCGAGTGCACTCGGGGCACCGCCCCTTTGCTTGTAACATCTGTGGGAAGACATCCAGCACCAAGTCTAATCATAATAAACACATTAAGATCCATCACGCCAGGGAGCCAGTCACTACGGAGGGGTAA
- Protein Sequence
- MESTVQCPVCTLYLHEGMALSAHLDTHPKDQVISALCSLAVPSSTVPAPAAPSAPTQTSPLTFSTPSLSSTPAPPPYTHLEHAHRPRPRAPYTPAPTPSTTPLSFSTDHPLYFLPQPPRTYSRHGDTNSFVLNNKFPDNDGLIMAFVQPPIVAEQELLNIPPHQQYDTKPPMHLVMPVKTTPPSMFYKQLTHQVSVKKYVSAVPLPLRSEDQGVVVVVGGAGESSQPPRGSSSTADVSKGDSNTCSSSKSGVKILSNIKVELPIQSIPEIIDLTSSQHRAQRPDLQEDEAILPDFVDAEMCHNYTQTRFTREHYTSKPCTSSPHKLVQTSAAGSSVVNTFSVIKNIGNPNLYKDTSHSEHSEENKGSDNSILPDLTCNENPSISPCSELTNDSNEALYDRMSGGRSLRVPTTPIAMYQNRFSTCETPTTVSSPKTNMFDKNQSKTLTIIPPASSECPCPCPSSNNFNINIDVSRVQDSECSNDKCDTPSEPQDTAGRLDGFFKEFERNKQQCKINNNSSECKSILSSIEDEDSVSCGDISKDLPEDSMENTFNSNFKTCLSERNENLKSSMDECAMGVDKLLDNLSQKSYTEMENMRPVNVIAFGSMVGGAPGETHASTSYQDVSKSDCSSMMMQWEAANFMDLGQTPYGRGTAQPSTDGEGLQSYTELATAGSKCCTTTEEAGRTELSEQDTPWPGMYCDVGGSTSYDLLARETWHSDGSDVDMPVTPVKDTYNDAEDIPIVVGVKPPERNYRCGSCGKTFNCPKERRVHRAKDHPAPQGEEQSPHPLQPRQLDIHSPQHEQQHTITVRKSKKKPSGSSTALLKPIQIKNEIVKTEIITNKLKEEVNNASGVGVVEGAVIPGIPGINFEDKKPKLEDVVVGEGVADAERRDKKRKRDWVCGTCKEDFPGQQEYNHHLKEHPLECLTCGKYFYRRSNLQLHIKRHLGIKNYKCDVCEKRFITKQKMLEHYYIHTGNTPIKCGLCPETFRRHSNMVQHRNKHHFLLKKKLRDYVCHCGEVFHTKKKLAWHKEVHEERPKACPHCSEKFIHAASLSRHMRRAHNTLFTQAEGGNAECSICHQVYLRTSLESHMRTHAGSRPYSCHICNKSFTTKWNLKLHRWTHANRSSKPYKCSLCKGAFIRHADYVSHMNSHKSVRPYTCNYCGCQFIRKYNCQRHVKEHENDKKFACQVADCGKSFHRSYYLAEHMRVHSGHRPFACNICGKTSSTKSNHNKHIKIHHAREPVTTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00179773;
- 90% Identity
- -
- 80% Identity
- -