Acin034089.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388317.1:26751884-26760179[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.1 6.7e+02 2.5 2.0 1 23 756 779 756 779 0.90 2 13 0.072 7.9 8.6 0.1 2 23 886 907 885 907 0.96 3 13 7.3e-05 0.0081 18.0 1.4 2 23 910 931 909 931 0.96 4 13 0.002 0.22 13.5 1.5 1 23 937 959 937 959 0.97 5 13 0.00096 0.11 14.5 4.1 2 23 966 987 965 988 0.95 6 13 0.15 16 7.6 2.1 5 23 1001 1019 999 1019 0.96 7 13 4.1e-05 0.0045 18.8 1.7 3 23 1026 1047 1025 1047 0.97 8 13 0.019 2.1 10.4 1.7 2 23 1060 1080 1060 1080 0.97 9 13 2.1e-05 0.0023 19.7 2.5 1 20 1086 1105 1086 1108 0.92 10 13 0.0017 0.19 13.7 1.2 1 23 1116 1138 1116 1138 0.99 11 13 0.015 1.6 10.7 7.3 1 23 1144 1166 1144 1166 0.98 12 13 6.8e-06 0.00075 21.2 0.7 1 23 1172 1196 1172 1196 0.96 13 13 0.0012 0.13 14.1 4.3 1 23 1202 1224 1202 1225 0.95
Sequence Information
- Coding Sequence
- ATGGAAAGCACAGTGCAGTGTCCGGTATGCACTCTTTACTTGCACGAGGGCATGGCCCTGAGTGCTCACTTGGACACACATCCCAAGGACCAGGTGATCAGTGCTTTATGCAGTTTGGCTGCGCCCACCTCGGGAGCACCAACACCTGTGGCAGCACCACCCCCTGTGCAGCCCTCCCCCCTTACATTCTCTACACCCTCACTGCCGACCACACCTGCACCCCCTCCCTATACCCACCTGGAGCATGCACATCGCCCTCGACCCCGGGCTCCATACACTCCCGCCTCCACTCCCTCCTCTACACCGTTGTCCTTCTCCACAGAGCATCCTCTCTACTTCCTGCCGCAGAACCCTCGAACATATTCCAGACACGGGGACACTAATTCCTTTGTGCTAAACAACAAGTTCCCTGACAATGACGGGCTTATCATGGCCTTTGTGCAGCCTCAAATGCAAGATCAGGAGTTGTTGAATATTCCCACACATCAGCAGTATGACACCAAGCCTCCTATGCACCTAGTCATGCCTGTCAAGACTCCTCAATCAATGTTCTACAAGCAACTGACCCACCAGGTGAGTGTAAAAAAGTATGTGTCGGCTGTGCCTTTGATGCAGCAGAGGTCAGAGGAGCAGGGGGTGGTAGTTGTGGTTGGGGGAAGTACGGAAACCCCGCACCCACCCTCCATTCCTAATGTTAGCAATGTGGATGTCACCAAGGGAGACAGCAACACTTGTTCTTCTTCAAAGTCGGGTGTCAAGATTCTCAGTAACATTAAAGTGGAGCTGCCCATACAAAGTATTCCGGAGATTATTGACCTCACTTCCACTCAGCACCGTACTCAGAGACCTGACCTACAAGAGGACGAAGCTATTCTGCCTGATTTTGTGGATGCGGAAATGTGCCACAACTACACACAGACTAGGTTCACTAGAGACCATTACGTGTCCCAGACCAGTGTGTCGTCCCCTCACAAATCTGCGCAGACCAGTGCCGCAGGTACTAGTGTTGTCAATACCTTCTCCGTTATCAAAAACATTGGGAACCCTAATTTGTATAAAGACACATCTCAGCACAGCGAAGACAACAAAGGCAGTGATAATTCTATTCTGCCAGATCTGACTTGTAACGAGAATCCCTCGATATCACCTTGCAGCGAGCTCACCAACGACTCTAATGAAGCCCTCTACGACAGAATGTCAGGGGCACGATCTCTACGTGTTCCCACTACTCCAATTGCTATGTACCAGAATAGATTCTCTACATGCGACACTCCCACCACACCAAGTTCCCCCAAGAATCATTTATTTGAAAAGAAGCAAAGCAATACTCTGACAATCATCCCTCCCACTAGTGGTGAGTGTTCCTCTGCCAATGACCTTCCAATGAATAGACTTGACATAGATTTAGTGTCCCGAGTGCAGGTGAGTGATAAGGGTGACTCCGCTAGCCAGGTCTTGGAGGTGGGGCGTTTAGATGGGTTTTTCAAGGAATTTGAGAGGAACAAACAGCAACAGTGTAAAATAAGCAATAATTCTAGTGAATGTAAATCTTTAGTGTCATCTATAGAAGATGAGGACTCGGGGGAAAGTTGCGGGGACATCTCTAAGGATCTGCCCGAAGAGAGGTCTGTGTCATCTATGGAAAACACATTTAATTCTAATTTTAAAAACTGTTTATCTGAAAGAAATGACTCATTAAAAAATACCATGGATGACTGTGCCATGGGTGTAGATAAGTTAATAGACAATCTTTCTCAGAAGAGTTATACGGAGATGGAGAACATGAGGCCTGTGAATGTGATAGCGTTCGGTAGCATTTTACCCGGGGACACACACGCATCTACCTCCAGTCAACATAAGTATGGTCACGAAGAGAGCAGTGTGATGATCCAGTGGGAGGCACACACAACACAGAAGGAAGAGTTTGCCCTCAGCAACTTTATGGACGTGGGACAGTCACAGTACGGACGGAGCACAGTCCAGCCCAGTACAGATGGGGAGGGTCTTCAGAGCTACACTGAACTAGTAACCAAAGCTTCCACTACTGCTGAAGATGCTGGGAGAGCGGAACTCTCAGAGCACGACACACCGTGGCCTGGGATGTATTGTGATGTGGGTGGTTCTACTTCTTATGATCTCCTTGCCAGGGAAACTTGGCATTCTGATGGCTCTGACGTAGATATGCCTATCACCCCCATGAAGGATAGCTACAACGATGCGGAAGATATCCCAATTGTGGTTGGTGTGAAGCCTCCAGAGAGAAACTACCGCTGCGGTTCCTGTGGGAACACATTTAACTGTCCTAAGGAGAGGAGAGTCCACCGAGCCAAAGAGCATCCTGTTTCCCCAGGAGAGGAGCAACCTGCAGGTGTTCCTACCCAGCCAACTGTGCCCACAGCAGTCAGGAAGACCAAAAAGAAAGGGAACAGTGCCCTACTCAAACCAATTCAAATCAAGAATGAGATTGTCAAAACAGAAGTGTCTACAAATAAACTGAAAGAAGAGGTGAGCAATGTGAGTAGTGCCGCAGGAGCAGAAGGGGCTGCCATCCCGGGAATAAACTTTGAAGACAAGAAACCCAAACTAGAGGAGGTGGGTGTGGGAGAAGGGGATGCTGAGGTCGAGAAGGTGAGCAAGAAGAGAAAGAGGGAGTGGGTGTGTGGCACCTGCAAGATGGAGTTTCCCGGGCAACAGGAATACAATCAGCACTTGAAGGAGCACCCCCTGGAGTGTTTAACTTGTGGCAAGTACTTCTATAGGCGTTCCAACATGCAGCTACATATCAAGAGGCACCTGGGCATTAAAAACTACAAGTGTGACGTGTGTGAAAAGAGATTCATCACCAAGCAGAAGATGTTGGAGCATTACTACGTGCATACGGGGAACACACCCATCAAGTGTGGCCTCTGTCCCGAGACTTTCCGCAGACACTCTAATATGGTGCAGCATCGTAATAAACATCACTTCTTGCTCAAGAAAAAACTGCGTGACTATGTGTGCCATTGTGGTGAGGTGTTCCACACCAAGAAGAAGTTGGCCTGGCATAAAGAGGTACACGAGGACCGTCCCAAGGCCTGTCCACACTGCAGCGAGAAGTTCATTCACGCAGCCTCTCTGTCGCGCCACATGCGACGTGCCCACAACACGCTCTTCACACAGACAGAGGGTGGTAATGCAGAGTGCAGTGTTTGCCATCAGGTTTACTTGCGCACCTCTTTGGAGTCCCACATGCGTACGCATGCAGGTGCCCGCCCTTACTCCTGCCACATCTGTAATAAAGCCTTTACAACAAAATGGAACCTCAAGCTGCATAGGTGGACACATGCCAACCGCTCTAGCAAACCCTACAAGTGTTCCTTATGCAAGGGTGCCTTCATCCGCCATGCAGACTATATCTCTCATATGAACTCCCACAAGTCGGTACGGCCATACACGTGCAACTACTGCGGCTGTCAGTTCATCCGCAAGTACAACTGCCAGAGGCACGTCAAGGAGCACGAGAACGACAAGAAGTTTGCCTGTCAGGTGGCAGACTGTGGCAAGAGTTTTCACCGCAGTTACTATTTGGCGGAGCACATGCGCGTGCATTCAGGCCATCGTCCCTTCGCTTGCAACATCTGCGGCAAGACCTCCAGCACCAAGTCTAATCACAACAAGCATGTCAAGATACATCACGCCCGAGAACCTGTCACTACAGAGGGATAG
- Protein Sequence
- MESTVQCPVCTLYLHEGMALSAHLDTHPKDQVISALCSLAAPTSGAPTPVAAPPPVQPSPLTFSTPSLPTTPAPPPYTHLEHAHRPRPRAPYTPASTPSSTPLSFSTEHPLYFLPQNPRTYSRHGDTNSFVLNNKFPDNDGLIMAFVQPQMQDQELLNIPTHQQYDTKPPMHLVMPVKTPQSMFYKQLTHQVSVKKYVSAVPLMQQRSEEQGVVVVVGGSTETPHPPSIPNVSNVDVTKGDSNTCSSSKSGVKILSNIKVELPIQSIPEIIDLTSTQHRTQRPDLQEDEAILPDFVDAEMCHNYTQTRFTRDHYVSQTSVSSPHKSAQTSAAGTSVVNTFSVIKNIGNPNLYKDTSQHSEDNKGSDNSILPDLTCNENPSISPCSELTNDSNEALYDRMSGARSLRVPTTPIAMYQNRFSTCDTPTTPSSPKNHLFEKKQSNTLTIIPPTSGECSSANDLPMNRLDIDLVSRVQVSDKGDSASQVLEVGRLDGFFKEFERNKQQQCKISNNSSECKSLVSSIEDEDSGESCGDISKDLPEERSVSSMENTFNSNFKNCLSERNDSLKNTMDDCAMGVDKLIDNLSQKSYTEMENMRPVNVIAFGSILPGDTHASTSSQHKYGHEESSVMIQWEAHTTQKEEFALSNFMDVGQSQYGRSTVQPSTDGEGLQSYTELVTKASTTAEDAGRAELSEHDTPWPGMYCDVGGSTSYDLLARETWHSDGSDVDMPITPMKDSYNDAEDIPIVVGVKPPERNYRCGSCGNTFNCPKERRVHRAKEHPVSPGEEQPAGVPTQPTVPTAVRKTKKKGNSALLKPIQIKNEIVKTEVSTNKLKEEVSNVSSAAGAEGAAIPGINFEDKKPKLEEVGVGEGDAEVEKVSKKRKREWVCGTCKMEFPGQQEYNQHLKEHPLECLTCGKYFYRRSNMQLHIKRHLGIKNYKCDVCEKRFITKQKMLEHYYVHTGNTPIKCGLCPETFRRHSNMVQHRNKHHFLLKKKLRDYVCHCGEVFHTKKKLAWHKEVHEDRPKACPHCSEKFIHAASLSRHMRRAHNTLFTQTEGGNAECSVCHQVYLRTSLESHMRTHAGARPYSCHICNKAFTTKWNLKLHRWTHANRSSKPYKCSLCKGAFIRHADYISHMNSHKSVRPYTCNYCGCQFIRKYNCQRHVKEHENDKKFACQVADCGKSFHRSYYLAEHMRVHSGHRPFACNICGKTSSTKSNHNKHVKIHHAREPVTTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00299415;
- 90% Identity
- -
- 80% Identity
- -