Cdis012811.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756370.1:9195001-9197346[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 4.4 1.7e+04 -4.1 0.0 29 39 36 46 30 57 0.69 2 7 0.06 2.4e+02 1.8 0.0 23 50 131 155 119 161 0.79 3 7 0.012 47 4.1 0.0 27 48 230 251 213 274 0.84 4 7 0.024 95 3.1 0.0 27 50 324 347 314 368 0.83 5 7 0.014 55 3.9 0.0 27 50 614 637 562 639 0.86 6 7 0.6 2.4e+03 -1.4 0.0 28 46 683 701 675 705 0.75 7 7 0.014 55 3.9 0.0 25 69 729 771 719 777 0.81
Sequence Information
- Coding Sequence
- ATGGCAAGTGACTCAAAAAGGGATGAAAATTCTATATCTAATTCTATCCCTGTATCTAGTGGCTCAAGCAGTGATGATATTGAATTCGTCATTGGTAAAGGGGGCAATATGGCggatattgtttatattattcctGAAGCAACTAAGACCACCAATAGCCCGGAGGATATCAAAAGTACTACTTTGAAACCTAGGCGTTCAGAAACTGATTCAAATAGTGATGACGTTGAATTCGTCATTGGTAAAGGCAGCAATATGGCGGATATTGCCAATATTGTTCCTGAAGGAAGTAGCATAACCAATAGCCCGGAGGACAGCAAAAGTACTACTTTGAAACCTAGCCGTTCAGAAACTGGTTCAAATAGTGATGACGTTGAATTCGTTATTGCTAAAGGTGGCAATATGGCggatattgtttatattattcctGAAGGAACTAAGGTCACCGATAGCCCGGAGGATATCAAAAGTAGCACTTTGAAACCTAGCCGTTCAGAAACTGGTTCAAACAGTGATGACATTGAATTCTTCATTGGTAAAGGCAGCAATATGGCGGATATTGCCAATACTGTTCCTGAAGGAATTAGCATAACCAATAGTCCGGAGGATAGCAAAAGTACTACTTTGAAACCTAGACGTTCAGAAACTGGTTCAAATAGTGATGACGTTGAATTTGTCATTGGTAAAGGCGGCAATATGGCagatattgtttatattattcctGAAGGAACTAAGATCACCAATATTCCAGAGGAAAACAAAAGTACAACATTGAAACCCAATCGTTCAGTAACTGGTTCAAATAGCGATGACGTTGAGTTCGTCATTGGTAAAGGCAGCAATATAGTGGATATTTCCAATATTGTTCCTGAAGGAATTAGCATAACCAATAGCCCGGAGGATAGCAAAAGTACTACTTTGAAACCTAGCCGATCAAATAGTGATGACGTTGAATTCGTCATTGGTAAAGGCGGCAATATGGCggatattgtttatattatccCTGAAGGAACTAAGATCACCAATGGCCCGGAGGATATCAAAAGTACTGCTTTGAAACCAAGCCGTTCAGAAACTAGTTCAAATAGTGATGACGTTGAATTCGTCATTGGTAAAGGCAGCAATATGGCGGATATTGCCAATATTGTTCCTGAAGGAATTAGCATAACCAATAGCCCGGAGGATAGCAAAAGTAGTACTTTGAAACCTAGCCGTTCAGAAACTGGTTCGAATAGTGATGACGTTGAATTCGTCATTGGTAAAGGCAGCAATATAGCGGATATTGCCAATATTGTTGCTGAAGGAATTAGCATAACCAATAGCCCGGAGGATAGCAAAAGTAGTACTTTGAAACCTAGCCGTTCAGAAACTGGTTCGAATAGTGATGACGTTGAATTCGTCATTGGTAAAGGCAGCAATATAGCGGATATTGCCAATATTGTTGCTGAAGGAAGTAGCATAACCAATAACCCGGAGGATAGTAAAAGTAGTACTTTGAAACCTAGCCGTTCAGAAACTGGTTCAAAAAGAGATGACGTTGTATTTGTCATTGGTAAAGGCAGCAATATGGCGGATATTGCCAATATTGTTCCTGAAGGAATTAGCATAACCAATAGCCCAGAAAATATTAATAGCTCTACTTCCAAACCCAGTTTTGCTGCTGTTAATTCAAATAGCGACGACGTCGAATTCGTCATTGGTAAAGATGGTAATATGGCTGATAATGCTTATATTATCCCTGAAGGAACTAAGATCACCAATATCCTGGAAGACAGCAAAAGTACTACTTTGAAACCTAGCCGTTCAAATAGTGATGATATTGAATTCGTCATTGGTAAAGGTGGCAATATGGCggatattgtttatattattcctGAAGGAACTAAGATCACCAATAGTCCGGAGGATATCAAAAATAGCCCGGAGGATATCAAAGGAAGTAGTATTATTAATATCCCAGAAAATACTAACAGCTCTTCTTCAAAATCCAGTTCTGCAGATGTTAATTCTAATAGTAATGACATAGAATTCGTCATCGGTAAAGGCGGTAATATGGCGGATATTGCTTATATTATTCCTGAAGGAACTAGTATTACTAATAGTCCAGAAAACACTAGCAGCTCTTCTTCAAAATCCAGTTCTATATCTGTCGATGGAAATAGAGATGAGATTGAATTCGTTGTTGGTAAAGGCGGCAATATGGCGGATATTGTTTACATTATACCAGATGGTAACAACAGTATGACTAATAAAGAAGTATTGGATCTACCGTCTGACAACGATCCAAAAACAACTTTGTCTCCATTTGAAATTTTAGTTAAGGCCGTCAACgctttaaaacaataa
- Protein Sequence
- MASDSKRDENSISNSIPVSSGSSSDDIEFVIGKGGNMADIVYIIPEATKTTNSPEDIKSTTLKPRRSETDSNSDDVEFVIGKGSNMADIANIVPEGSSITNSPEDSKSTTLKPSRSETGSNSDDVEFVIAKGGNMADIVYIIPEGTKVTDSPEDIKSSTLKPSRSETGSNSDDIEFFIGKGSNMADIANTVPEGISITNSPEDSKSTTLKPRRSETGSNSDDVEFVIGKGGNMADIVYIIPEGTKITNIPEENKSTTLKPNRSVTGSNSDDVEFVIGKGSNIVDISNIVPEGISITNSPEDSKSTTLKPSRSNSDDVEFVIGKGGNMADIVYIIPEGTKITNGPEDIKSTALKPSRSETSSNSDDVEFVIGKGSNMADIANIVPEGISITNSPEDSKSSTLKPSRSETGSNSDDVEFVIGKGSNIADIANIVAEGISITNSPEDSKSSTLKPSRSETGSNSDDVEFVIGKGSNIADIANIVAEGSSITNNPEDSKSSTLKPSRSETGSKRDDVVFVIGKGSNMADIANIVPEGISITNSPENINSSTSKPSFAAVNSNSDDVEFVIGKDGNMADNAYIIPEGTKITNILEDSKSTTLKPSRSNSDDIEFVIGKGGNMADIVYIIPEGTKITNSPEDIKNSPEDIKGSSIINIPENTNSSSSKSSSADVNSNSNDIEFVIGKGGNMADIAYIIPEGTSITNSPENTSSSSSKSSSISVDGNRDEIEFVVGKGGNMADIVYIIPDGNNSMTNKEVLDLPSDNDPKTTLSPFEILVKAVNALKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -