Cdis003772.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756360.1:23285480-23287207[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-10 4.7e-07 29.8 0.0 1 37 15 52 15 59 0.90 2 2 6.9 6.6e+03 -2.7 0.3 31 41 521 532 520 533 0.85
Sequence Information
- Coding Sequence
- atggTGAAACAttataaaagaataataaatagaGGGGATTGGTCAGAAGAGAGTATGAAAAATGCGGTGGATGCTGTAATAGACGGAAAAATGGGATACATGCTAGCAGCGAAGACATTTTCTGTCCCCCAGACAACGTTAGAAAGAAAGGTCAAGGTTGTTCGTGAAAACATGAAAGGTACTGCTCCTATAATATGTACTCCATTGAAGGTTCCGTTAGGCACCAAAGGGCAAGTTTTTACTGATGATGAAGAGAAAGAGCTTTGCGACTATATTTTGGATATGGAGAGTCGCCTTTATGGACTTACTACAAAAGACTTAAAGGCAATAGTTTACACCCTAGCtgtgaaaaacaataaacaccATCCTTTCAACATCGAGAAAAAAGAAGCAGGCAAGGACTGGGTTCAAAGGTTTTTAAACAGACACCCCGAACTGTCGATAAGGAAACCAGAAAACACCTCAGCTGCGCGTGCTGCAGGGTTTAACAAAGAAGTTGTCaatcaatttttcatttttttgggaaacGTTTATGATGAACATCACCTAACACCAGATCGTATTTATAACTGCGACGAAACCGGCATTTCAGTTGTGCCTAAAACAAAATCTAAAATTATAGCAAGAAAGGGACGAAAACAAGTAGGATCTTTAACTTCTGCTGAAAGAGGTACTACAATCACAGTGGAAATATGTTTCAGCGCTAGTGGCCATTATATGCCACCTATGATGGTATTTCCTAGGAAAAGAATGGACCCACAACTGATGCTGAATTCTGCACCTGGAGCTTGGGGAGTTTGCAGTGACTCTGGCTggatgacagctgaattattCCTGGGATGGTTTAAAAAGTTCGTGGAATTCAGTGGGGCTACAGTTGATCGACCTGTTTTGTTATTGTTGGATGGACATGCCACCCACACGAAAAACATTGATCTGATAAATGAAGCTCGACTCCAtggtgttattattttatgttttccaCCACACACTACTCATCGTCTTCAGGTCGCTGATGTTGCTTACATGAGACCATTAAGCATTTATTACGATCATCAAATCACAGTGTGGCTCCGTAGCAACCCAGGAATGATTGTTACAGTCCGGCAAGTTGCCGAAATTTTTGGAAAAACCTTTATACAGGCGTCTACGATGTCAACAGCTGTTAATGGCTTTAAGAAATGTGGAATATGGCCATATGATCCTACAGTTTTTTCTGAAAGTGACTTTGCGCCTTCTTTGACCACAGATATTCCGCGAACTGAGAATTTGCCAGTCTCTGAAATACTAAATGCAGCCAATAGAACACAAACCATCGAACTTTGCACTGTAACAGCACCTTCGGTGAATTCTACTGAATTGATGCCAATATCCACTGAAACAGCACCGAACAGCCAATCCGTGCCACCTATCTCAATTCCTGGAGCCTTATCGACCTCTGAGCCGGGTTGTTCTACATGGGTTGACAATACAGAAATATACAAAAGGTCAATTACTCCAgtgaaatcatttttttctcatACCAGTCCGCAGCAAGTAATGGCTTTTCCAACGACTCGCAAAACTTTACGCGTGACTAGAAAAAGAGGAAAAACCGCCATTATTACATCGTCGCCATACAAAAATGAATTGGAAGAGacgattaaaaaaaagaaacttatAGAAGAGGGTAaacagaaaagaaaagaaacgaGAGAGTTAAAGAAAACTCAAAAAAgactgaagtaa
- Protein Sequence
- MVKHYKRIINRGDWSEESMKNAVDAVIDGKMGYMLAAKTFSVPQTTLERKVKVVRENMKGTAPIICTPLKVPLGTKGQVFTDDEEKELCDYILDMESRLYGLTTKDLKAIVYTLAVKNNKHHPFNIEKKEAGKDWVQRFLNRHPELSIRKPENTSAARAAGFNKEVVNQFFIFLGNVYDEHHLTPDRIYNCDETGISVVPKTKSKIIARKGRKQVGSLTSAERGTTITVEICFSASGHYMPPMMVFPRKRMDPQLMLNSAPGAWGVCSDSGWMTAELFLGWFKKFVEFSGATVDRPVLLLLDGHATHTKNIDLINEARLHGVIILCFPPHTTHRLQVADVAYMRPLSIYYDHQITVWLRSNPGMIVTVRQVAEIFGKTFIQASTMSTAVNGFKKCGIWPYDPTVFSESDFAPSLTTDIPRTENLPVSEILNAANRTQTIELCTVTAPSVNSTELMPISTETAPNSQSVPPISIPGALSTSEPGCSTWVDNTEIYKRSITPVKSFFSHTSPQQVMAFPTTRKTLRVTRKRGKTAIITSSPYKNELEETIKKKKLIEEGKQKRKETRELKKTQKRLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00298981;
- 90% Identity
- iTF_00298984;
- 80% Identity
- -