Cdis010322.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756367.1:9093569-9096880[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-11 7.4e-08 32.4 0.0 4 38 189 224 186 229 0.89 2 4 6.3e-12 6e-09 35.9 0.1 2 39 241 278 240 281 0.93 3 4 3.4e-16 3.2e-13 49.5 0.0 2 45 296 340 295 340 0.97 4 4 7.7e-17 7.3e-14 51.6 0.0 2 42 348 389 347 392 0.93
Sequence Information
- Coding Sequence
- ATGACAGGTCATCCAGATTCTTTACCACATTCCCCAGAGGTAGATACAAGAAGTGCTGGTGAAGGTGGAATACCCTCGGATCCTGGAGACTCTATACATTTAAATGGCTCGTATATGCATCAATTTAAAAGAAGCGTTAGTAATGAGTCAATCAACTGCATAGAGCCCGAGTATGGATTACCAGTTCCCATGGCACCAGTGGCCACACCAGTGCAAGATTCATCAGATCTCCCACTATCATTACAATCGGATGAAGAAAATAATTCTTCAACACATAGAAAAATTAAACTGGAACCATTACATTCATTAGATCATCAGATTACATTGGACATGGACATTCATATGAATCAATTTCATGGAAGAGATATTAAAAGAGAACAACAGACTTCTATGATGTTAGACTCAATAAAAGTCGAACGTCAATGTAACCTAGATAAGAATGTATATGAAGAAGGGAATGATTCTTATCATGAAATGTCTCAAGATGATTGCTTAGGACATGGAATCATGGGATATAATAGCTTACATATGATGAGTACCACTCCCAAAACTTGGTCTCAGCAAGATATGGAGAATGCTTTGGATGCATTGAGGAATCATAATATGAGTTTAACAAAAGCTTCTGCAATGTATGGAATTCCATCAACAACATTATGGCAGAGAGCCCACAGAATGGGTATTGATACACCAAAGAAAGAAGGGCCCTCAAAATCATGGAGTGAAGGGAACTTGCACAGCGCTCTACAGGCATTAAGAAGTGGCACAATATCTGCAAACAAAGCGAGCAAAGCTTATGgtATTCCCAGTAGCACATTATACAAAATAGCAAGACGTGAAGGTATAAGACTCGCTGCACCATTCAATGCTGCCCCAACTGCATGGAGACCTGGCGATCTTGAAAGGGCCCTCCAGTCAATACGTTCTGGGCAGTCATCTGTGCAAAAGGCATCCGCTGAATTTGGAATTCCCACTGGAACTTTGTATGGAAGATGTAAAAGAGAAGGAATAGAATTGTCCAGATCGAATCCAACACCATGGTCGGAAAATGCAATGGGAGAAGCTTTGGAATCAGTCAGagtTGGTCAAATGTCCATAAACCAAGCAGCGATACATTACAATCTCCCGTATTCGTCACTTTACGGTCGCTTCAAGAGATGTAAATATGAAGGTGAAAATATTATGAACGATGTTCCATCACAACATTCCCAAGAGTCACATCAATCTAGTTCTAACAATATGTTCTCAGCAGACCAGCAAAGTATGAATCATCTCAGTGTGATGTCTTTGGAGCATGGCAGTGGCAGTCAGGATTGTTCCCAGACAATGTATCCCGTGTACCATCAGACCAGCAATCATCCCTCCAATGTGAACACCACAAGCGACAATTGTTTACCTCATAGTAATCAAGACTGCGTTTCCACTAGTTGA
- Protein Sequence
- MTGHPDSLPHSPEVDTRSAGEGGIPSDPGDSIHLNGSYMHQFKRSVSNESINCIEPEYGLPVPMAPVATPVQDSSDLPLSLQSDEENNSSTHRKIKLEPLHSLDHQITLDMDIHMNQFHGRDIKREQQTSMMLDSIKVERQCNLDKNVYEEGNDSYHEMSQDDCLGHGIMGYNSLHMMSTTPKTWSQQDMENALDALRNHNMSLTKASAMYGIPSTTLWQRAHRMGIDTPKKEGPSKSWSEGNLHSALQALRSGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRPGDLERALQSIRSGQSSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSENAMGEALESVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYEGENIMNDVPSQHSQESHQSSSNNMFSADQQSMNHLSVMSLEHGSGSQDCSQTMYPVYHQTSNHPSNVNTTSDNCLPHSNQDCVSTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00179066;
- 90% Identity
- -
- 80% Identity
- -