Acin043664.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388314.1:16210890-16221240[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.4e-10 1.1e-07 32.9 0.0 4 39 122 158 119 162 0.90 2 4 2.1e-11 4.3e-09 37.4 0.2 2 39 174 211 173 214 0.93 3 4 1e-15 2e-13 51.3 0.0 2 45 229 273 228 273 0.97 4 4 1.1e-16 2.1e-14 54.4 0.0 1 41 280 321 280 324 0.95
Sequence Information
- Coding Sequence
- ATGGCACCTGTAGCCACACCTGTACAAGATTCATCTGAAGTACCATTATCATTACACGAAGATGAAGATAATAATTCTTCTGCACAATGTAAAATTAAATTGGAGCCATTACATTCTTTGGATCATCAGATAACTTTGGATATGGATATTCATATGAATCAGTTGCATGGTAGAAATATTCACAGTGGACAAATAACAATGATGACCGAATCATTAAAATCTGAACAACAATATCTTAATGCATGTGATGAAGGAAGTGATTCGTGCCATGAAATGTCACAAGATGATTGTATGGGACAGGGAATAATGAATTACAATAGCCTGCATGTGATGAACAATACTCCAAAAACCTGGTCTCAGCAAGATATGGAGAATGCTTTAGACGCGTTGAGAAATCACAATATGAGCCTAACAAAGGCATCTGCAACCTATGGTATACCATCGACAACATTATGGCAAAGAGCTCACAGACTAGGGATTGACACACCAAAAAAGGAAGGTCCATCCAAATCGTGGAGTGAAGGGAATTTGCATAGCGCTCTGCAGGCCTTAAGAAGTGGAGCGATATCTGCAAATAAAGCTAGCAAAGCTTATGGAATTCCTAGCAGTACACTGTACAAGATAGCAAGACGTGAAGGCATAAGATTAGCTGCACCATTTAATGCTGCTCCTACCGCTTGGAGGCCTGGAGATCTTGAAAGAGCACTCCAGTCAATCAGATCTGGACAATCATCTGTGCAGAAGGCGTCTACTGAATTTGGAATTCCAACAGGGACATTATATGGGAGATGTAAACGAGAAGGAATAGAACTGTCCAGATCTAACCCAACTCCTTGGTCTGAAGACGCTATGGGTGAAGCTTTGGAATCAGTCAGAGTTGGCCAAATGTCTATAAATCAAGCAGCTATACATTACAATCTTCCATATTCTTCTTTGTATGGTCGCTTCAAGAGATGTAAATATGATGGAGATAATATTATGAATGATGTCCCTTCGCAGCATATTCAAGAATCTAACCAATCTAATAATATGTTACACCAAACAAACATGACTCACTCGGGCATGATGTCTCATGATCAAGGAAGTCAGGAGTGTTCTCAGCAGATGTATTCTCCTTATCACCACTCCACAATTCATCCCTCCAGTGTACACACTACCAATGATAATAATTGTTTACCTCATAGTAATCAAGACTGCGTTTCCACTAGTTGA
- Protein Sequence
- MAPVATPVQDSSEVPLSLHEDEDNNSSAQCKIKLEPLHSLDHQITLDMDIHMNQLHGRNIHSGQITMMTESLKSEQQYLNACDEGSDSCHEMSQDDCMGQGIMNYNSLHVMNNTPKTWSQQDMENALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKSWSEGNLHSALQALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRPGDLERALQSIRSGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALESVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYDGDNIMNDVPSQHIQESNQSNNMLHQTNMTHSGMMSHDQGSQECSQQMYSPYHHSTIHPSSVHTTNDNNCLPHSNQDCVSTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00298965;
- 90% Identity
- -
- 80% Identity
- -