Csar004078.1
Basic Information
- Insect
- Cephus sareptanus
- Gene Symbol
- lola
- Assembly
- GCA_030142515.1
- Location
- JARQTD010000411.1:637692-644546[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.2e-16 1.1e-12 47.7 0.0 2 42 381 422 380 425 0.94
Sequence Information
- Coding Sequence
- ATGTCGATGCAACAGTTTTGTTTGCGCTGGAACAATCATCAGCCCAACTTTATATCGGTTTTCTCCAGTTTGTTGAATAATGAGACTCTGGTGGATGTGACATTGGCTGCTGAGGGAAGGCACTTACAGGCACATAAAGTTGTCTTGTCTGCGTGTAGCACATATTTTCAGTCGCTCTTCACTGTCAATCCCTGTCAGCATCCTATTGTCATTCTTAAGGATGTTAAATTCTCTGATCTCAAAATCATGGTAGATTTTATGTACTATGGGGAAGTCAATGTTTCTCAGGATCAATTACCATCGattattaaaACTGCAGAGagtctaaaaataaaaggttTAGCAGAGATGCACACAGCCAGTTTAACAAAATGGCCAAGCGGTGGAAGTGAACCTGGTGGAGGAGACAGAGGTGAATCATGTTCACCGACACCATCACCACTGTCACCATCGTTCCGTCGAAAACGACTACGCAAAACTTCCACAGGGTCAACTTCTGGCTCTGGAGAGAAGCAAGAGGAAATAAATGAGATCACTTTAGTGGCGACAAACGTGGTAAAACCTGAACCATTACTTGTCTCACAGGAAAGTGGAGAAAATCTAAGAAGACCATTAAACACCAGTACGGAGTCTCAGGGCAGTATCGATGAAGACCAAATATCTATTATGAGTAACATGGAGAGTAGCTCGGCCAATACTCCGGCACAGAGTGAAGGTTCGATGCAGGATGTCAGCAGTCAACAGTCTGGTTCAAATGTTGGACAAAGTTCAGTTCCCCCTCAACCACCAGCTCATCAagGATTGCAATGGACAATAATGGAGCACACGTATCCACGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGATCCAAGCATCCTCGGCGTTCACCACGCCCGAAATATCCGGGAGCTCGTCGTCGGCGATCGGCGAGCAGTACTCCGGTACTAGCACCACTGGTCCAAGCTGCGCCCTCACGAGCTATCCGAACTCCTCGCACGGCACGTTGCAGCATACctcctcgtcgtcatcgtcgagCGGCCCGACCCCATCGACACAGTGTCCAAGTAACTGTCAGAGCCCTTGTGCGAGCCCACAGACAGCAATCAAAAGGAAGCGCTCGACGAATCCTCAGGCAgacgaaaatttcatcaggGCGCTGGACGCGGTTCGTTACGGCGGCATCGGATTCTGTAAGGCTGCCAGGATGTTCGGCGTCAATAACCGAACCCTCTGGCTCGAGTACAAGAAGAGAGGCTACCCGAACAATCGTCCCAGCCTTAAGTCCCGGGTCAAACAGGAAGTGAACTCCTCCCCGCCGCCTGCACCTTCTACTCAGCCCGTCAGCTCTCAAAGTCCAACGCCGATGGGACCACCAACCACTCCTCATAGTAGTCACAATACTCATAGCACTCACACTATGCTCACCACGCATAGTCCACATGCTATGCTTAGCGGATACATTGACAGCAGACATACCGATTATGCTCTGCAGAGCAGCACTGTCCAGTGCAAACAGGTGGGCACGAAACGAGGTCGACTGTTAATACGTCAACCTCGAGTGAAAAAGGAGTGCGAACCGTCAAGGCAGCCATCACCGGAGAGTGAACCAAATTCGCCGCAGACGAGCAGTGGTGCTACGACCCCAGGTGTTCAGCAACCGTTGACGCCGATACTAAACCATCCTAAGGGTCAGGAATGGGATGAGGAGGGTCAAAGAACATCACAGGGCTTGTTACAGTGTACGTCGACGAACCCGCAACAGAATCCCACGGCGGGGAGTCCTTCGAATCTTCTAACTGTTCCCCAGATGTCGTACTTGGTGAAGCGACATTCACATCCGGTATTACCCAGTCAGCAGGCACCGGCATCCGGGAGTTACTTTATACATAGACAACACTCCAATCCTGAGTATCCCGGTAGGACGACGAGTCCTAGCATAGTCATTGACCCAGTTCCTACGACGCCATCTGTTGTCAAAGTCGAGGAGAGTTCAAGGGAAACTTCAGGAGAAGGAACGAATAATTCTGCCGGAGGCGGTCTCAGGGTCCGGACGACGGAACTTCGGCGAAGCAGCTCATCTCCACAGACGGGATCCACCAGGTGCGAGGTGACAAGGACTCGCGCAGGCTCTGGTGATCAACGACTTGGACATTGTCCTGTTCAACGACCTGGACCTGCGCTTGGTTGTAATCATTGCTGGAATACTATTGATGGGCATGGACGTATCCTTAGGAGGAAGACCAAGTATCATTGTCCGGAGTGCCAGATTAACCTCTGCATCGTACCCTGCTTTCAGGAATTTCATGAAAGGCAACGAGAGGCATCCATTTTGAGGCCTTTACCGAAAACTAGCTCTATTTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGGSEPGGGDRGESCSPTPSPLSPSFRRKRLRKTSTGSTSGSGEKQEEINEITLVATNVVKPEPLLVSQESGENLRRPLNTSTESQGSIDEDQISIMSNMESSSANTPAQSEGSMQDVSSQQSGSNVGQSSVPPQPPAHQGLQWTIMEHTYPRFALSSCQTNLSIQASSAFTTPEISGSSSSAIGEQYSGTSTTGPSCALTSYPNSSHGTLQHTSSSSSSSGPTPSTQCPSNCQSPCASPQTAIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEVNSSPPPAPSTQPVSSQSPTPMGPPTTPHSSHNTHSTHTMLTTHSPHAMLSGYIDSRHTDYALQSSTVQCKQVGTKRGRLLIRQPRVKKECEPSRQPSPESEPNSPQTSSGATTPGVQQPLTPILNHPKGQEWDEEGQRTSQGLLQCTSTNPQQNPTAGSPSNLLTVPQMSYLVKRHSHPVLPSQQAPASGSYFIHRQHSNPEYPGRTTSPSIVIDPVPTTPSVVKVEESSRETSGEGTNNSAGGGLRVRTTELRRSSSSPQTGSTRCEVTRTRAGSGDQRLGHCPVQRPGPALGCNHCWNTIDGHGRILRRKTKYHCPECQINLCIVPCFQEFHERQREASILRPLPKTSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395045;
- 90% Identity
- iTF_01395045;
- 80% Identity
- iTF_00298430;