Cpyg006482.1
Basic Information
- Insect
- Cephus pygmeus
- Gene Symbol
- -
- Assembly
- GCA_036026175.1
- Location
- JAYRBY010000459.1:150423-150890[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-08 9.7e-05 22.5 0.0 1 34 14 46 14 54 0.90 2 2 1.2 2e+03 -0.9 0.1 28 44 87 104 85 105 0.73
Sequence Information
- Coding Sequence
- AtgacaaaaagtaaaaaggaatCAAAGCGAAAGAGGTACACTGAGGAAACATTGAAAGCAGCTGTAGCTGCTGTGTGGATTGGACGAGGACTTCAAGCTGTCAGTGTGGAGTTCGGCATCCCAAAGACTACCCTTTTCGACAAACTGAAAGCTTCTGCTCCAGTAATTAAAACAGGAGGACCAGCGACAGTGCTATCCGATGAGGAAGAGCAACAACTTGTTAAGTGGATCATGTACATGAGTGTGTGTGGCTTTCCTGTGACGAAAAGCACACTCGTAAGCAGTGTAACGAGTCTTATTAAGCAGCTAAAACGTGACAATCCCGTGAAGAATAATTGTCCAGGCCGCAGTTGGTATGAGGGATTTCTCAAATGTCACCCAGAGTTAGCTTGTAGGATTGCACAAAATTTGTCATACTCACGAGCCTCAGTTACCAAAACTGCTttacgaaaaaataaagaattgtaa
- Protein Sequence
- MTKSKKESKRKRYTEETLKAAVAAVWIGRGLQAVSVEFGIPKTTLFDKLKASAPVIKTGGPATVLSDEEEQQLVKWIMYMSVCGFPVTKSTLVSSVTSLIKQLKRDNPVKNNCPGRSWYEGFLKCHPELACRIAQNLSYSRASVTKTALRKNKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294396;
- 90% Identity
- iTF_00294396;
- 80% Identity
- -