Cpar012793.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cephus parvus
Gene Symbol
ush
Assembly
GCA_030142435.1
Location
JARQTA010000869.1:97361-100730[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.06 5 8.1 0.0 6 20 300 314 300 316 0.95
2 8 0.00094 0.077 13.8 2.0 1 23 347 369 347 369 0.98
3 8 0.11 9.2 7.3 1.6 3 20 403 420 402 422 0.93
4 8 0.017 1.4 9.9 4.4 2 21 625 644 624 645 0.94
5 8 0.078 6.4 7.8 0.0 3 20 672 689 670 691 0.91
6 8 0.12 9.5 7.2 0.0 2 23 730 751 729 751 0.94
7 8 0.01 0.85 10.5 1.4 1 23 757 779 757 779 0.99
8 8 0.11 9 7.3 0.5 3 21 868 886 867 887 0.92

Sequence Information

Coding Sequence
ATGGTCGTGTCACGCGAATCTCCAGATCACGTTGGATGGCAGATTTTTCGTATGAAATGGGAGGATGAGGAGTGGAGCGACTCGGAGAAGACTCCGTCTGTGAGCAGCGGGATAGAGGGTGGCGGATCAGCAGTATCGAGCCCTGCGGCACCACCTGTTGAGGAGGAACCGAATCTTCCGCCACCTCCAAGACTCAATCCTTCCGGTACTGGCTTACCACCGACTTCCGCCGCAGAGGACTTCCGGTTGCGACTCAGCGTCCTCTCCGAGGACACTCGTAAGCGGTTAGTCAGCCTTACCGAGGATATCGAGGCCGCTAGAGGATTACGGGAACGTCATGCCTCCTCGAGGTCGACGCAGGGTCGCGACCCAAGTCCCAAGAAGCCCCAATCAGACCCTGACGAGGATGGCAACGCTTCTAAGGATCAGGACACACCAAGACCTTCGTCTTCGATATCATCGTCGCGAAGGAGGGAGGCGAGGAGGGACTCCGAAGACTCGAGACGCTCCGACGAGCTTCCGTTAGACTCTAAGAGGATGAAACTCGACGACGATGCTGCCCCGAGACTGAGACTGAATGCTAGTCTGGCAACGGACCCTGCACTCCGGCCAGCTACCGTTGCCGCCCTTACTATCAAGCCTGAGAACATCTCCCCTCCGAATCCCGCAGCACCGCTTCCTGCAGGACTTCAAAATGGTACGCTTGTTATTATCATACATCATCAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCTTGTGGTATACGATTTAGTTCCGCAAGCACCCTGGAAGCTCACCGGACCTTCTACTGTGCGCACAGACCTCGCGTCGATGAGGAACCGAcgaacgacgacgacgaggagaaGACTGGTGGAAAGTTCGAAGTCCGCAAGGCTTACGCCTGTCCGCACTGTTCCTATAGCAACGACAAGAAGGTCTCCTTGAATCGGCACATGAGGATGCACGCGTCGTCGCCGGTACCGCCACCTGCACCGGCAGCACCTTTAACTCCCGGTACCGGAAATGCTGCCAACGGTTCGTTGAACGAGGAGGCTGAGAGATACTGTCGCAATTGCGACATCAGATTCAGCTCCTTGAAAACGTATCGCGCTCACAAAACGCACTACTGCAGTACCAGGCATGTTGTCAAGGACGTTCCTCCTCCGGTTAAGGCCTCACCACCGACGAGTTCGAGTCCTGGGGACTCGCCACCACCTCAGCCATGTCTAGCGCTTCCGACAAATCCTATCCTGATTGTTCCCTATTCCTTGTTCCGAGGCGCGAGCGTGCTGGCTGCTCCTGCTCTTCCTGCTCCCGATACAGCGTGCTTCCTTCTACCGAACGGGTCCCTACAGCCGATGACCAGGACCTTGTCTGCGCCACAGACCACCACCGAGGCTCCGGCTGTCCTCAGGGCAGCCAACAAGCCTTCCACGCCTGCATCCGTCGTCGCTGCTACGTCGCCATCCTCAGCAACGGCTCCTCTAGATCTCAGTGTTAGACGATCGCCAGTTCTACAGGATGAAAAGGAGAATAGAGTCTCGCCGGCACCGTCCTTACCTCCGCCAGGAAGTCCTAGGTCTCGTGGTAGTAGCAGTCCAAGGACACGATCGTTACCAACTGCACAGACTGGTTCTGCACCTGCCCCGCCACCCACGGAGCTGGCATTAAGATTGGCTGAACTACCACCACCTCCCGTTCCTAGTGTTCTCGTCAAGCAGGGTGTATCCAGATGCAAAGAGTGCAACATAGTCTTCTGTCGGCATGAGAATTTCGTGGCGCATAAAAAGCATTACTGCCAAGCAAGGGAAAGTACTGTCAGTAGTCCACCTCCACCTGGAACTCCTTCACCGCCGCTGGTACAGCTAATTTGTGCCGCTTGCGGTATTAAATTTGCCTCGATGGACAACTTAGTGGCACATCAAGCCTTCTACTGCCCCAAGAAGCCAGAACCAAAGGAACATCATTCACGTTGTCGCAAGTGCAAGgTCGTAATCGAGCCCGGTACGACTCACACATGTTCGAGTGGACCAACAGGAGGCTGGATATGTCCAGTATGCGGGGCCATAAGTCCCACAGCTGGCGCAGCTCAGCGTCATATGGACGCTCATCAAGGTGTCAAGGCGTTCCGATGTACAATTTGTCGGTACAAGGGTAACACTCTGAGGGGCATGAGGACGCACATCAGGATGCACTTTGAAAAACGTGGCACGGATCTTCAGGAGGAAAACTATATAATCTGTGTTCTCGAAGACGACACAACTGTTCCGACGTCGGAACCAGCGCCTGCAACCACACCGGAAGAGATCCCCGCGGAGGCTCAGGTAAATGGTAAAACGGAAGTGCGAAAGAGTCCTCAACCGCCGGCAACTTCCGTACCGAGCAAAGTGAAGCAGGAACGCGAAGACACCCCACCACCGGAAGAAAGTCTGGATCCCAGTAAAACTGGGCCGCGTTACTGTCGCTCCTGCGACATCAGCTTCAATTACCTGAGCACTTTCATAGCCcacaagaaattttattgctcGAGCCACGCCGGCGAAGtgagcaacaacaacaacaacaacaactcCAGTAGCCACGCGACAACACCACCCAGTAGCAGGACTGAAGCATCTGTACTTTAG
Protein Sequence
MVVSRESPDHVGWQIFRMKWEDEEWSDSEKTPSVSSGIEGGGSAVSSPAAPPVEEEPNLPPPPRLNPSGTGLPPTSAAEDFRLRLSVLSEDTRKRLVSLTEDIEAARGLRERHASSRSTQGRDPSPKKPQSDPDEDGNASKDQDTPRPSSSISSSRRREARRDSEDSRRSDELPLDSKRMKLDDDAAPRLRLNASLATDPALRPATVAALTIKPENISPPNPAAPLPAGLQNGTLVIIIHHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPCGIRFSSASTLEAHRTFYCAHRPRVDEEPTNDDDEEKTGGKFEVRKAYACPHCSYSNDKKVSLNRHMRMHASSPVPPPAPAAPLTPGTGNAANGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDVPPPVKASPPTSSSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPALPAPDTACFLLPNGSLQPMTRTLSAPQTTTEAPAVLRAANKPSTPASVVAATSPSSATAPLDLSVRRSPVLQDEKENRVSPAPSLPPPGSPRSRGSSSPRTRSLPTAQTGSAPAPPPTELALRLAELPPPPVPSVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARESTVSSPPPPGTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKKPEPKEHHSRCRKCKVVIEPGTTHTCSSGPTGGWICPVCGAISPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYIICVLEDDTTVPTSEPAPATTPEEIPAEAQVNGKTEVRKSPQPPATSVPSKVKQEREDTPPPEESLDPSKTGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEVSNNNNNNNSSSHATTPPSSRTEASVL