Ccin009300.1
Basic Information
- Insect
- Cephus cinctus
- Gene Symbol
- -
- Assembly
- GCA_000341935.1
- Location
- NW:225100-230569[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.67 8.1e+02 -0.9 0.1 28 36 45 54 45 59 0.75 2 2 2.4e-10 2.9e-07 29.4 0.0 1 40 62 100 62 102 0.94
Sequence Information
- Coding Sequence
- ATGGAGACTGCGGAGTCAGCTGATTCATTGATTCCATTGAAAGTTTCAGTGGAAGggcataacaaaaaaattatttggaaaaagTGCATCAAAGAAGTGATAGGGACTACAGAAACTGCAGACTCATCTGTCATTTCACGGAGTACTTTGAAAAGGAAAAGGACAAATGTTGAACGGAGATACACAAATGCTGATCTCGAGAAAGCTTTAGACGCGGTTAAAACGGGAATGCCTCTAAAAAGAGCATCAAATCTTTACAAGATTCCGAGGACGACATTGCTTTACAAGAAGCGTGGTACATTACCACCTGTACTGACATCTCCTGGACCTAAATGCATACTTGGCGAAGAAAATGAACGCAAGCTCGTTGAGTGGATTTTGCACATGAATCAAAGCGGCTTCCCTCTAACTCGGGTCCAATTATTGGATAGTGTTCAACTGCTTATAAAGCATCTAAAGATCAAGACTCATTTTAAGGATAATCGCCCTGGGAGACATTGGTACAAAGCATTTAAGAATCGTAACCGGGAAATAGCTGAAAAAGTTACCCAAAATTTGACGCGCAATCAAGCTGATTTAAGTGATAAAAAGCTGCGAGGGTGGTTCTGCGAGGTACAGAAGTATTTTCAGTCGAATTCACTTCTTAATATTGATGCTTCTCGCGTATTTAATTGCGACGAGtcggctttttttttaagtccaAACGATGGCTCGGTATTGACCAAAAAAGGTGATAAAACGGTgtacaatttcattaaaaatcatgaaaaagaGTGCTTGACCACACTCATCTGTGGAAGTGCGAGCGGGGAACTCGCGCCACCGATGGTACATTTTCCTTACAAACGGATTCCCGGATATGTCGCTGCACGAATGCCAAGAGACTGGGCCATCAGTCACTCGGACAGTGGGTGGATGACTGGGGAAACATTTTTCGAGTATGTCGCGAACGTTTTTTACCGATGGTTGCTGAAGATTAAAGTCGTGTTCCCAGTCGTACTCTTTGTAGACTGGCATACTTCGCATTTGACCATGGCGTTAAGCGATTTTTGTAGAGAAAAAGGCATTAAGCTCGTGTCGCTATACCCAAATGCAAGTCACATCTTACAGCCGATCGACGTcgcattttttcattctctcaaGGGAATATGGGGGAATGTAGTTCGTAATTGGCGACTAGAAAATAACGATCAACGTTTAAGACGAGAAGACTTTGCACCGCTTCTTCAAAAAGCTATCGACACTCTCGACACAAAAAGTATTCTCAAAAGTGGTTTCAGAACAACTGGGCTCTACCCTTTTTCAGCGGATAGAATTGACTACCAGAACATTTTTACGAACTACGATAGCTCCGAAAAGATCCCTCCGGTGACTGAAACCGAAGGATCTCGGTATAAAGAATTGTTAGAGTATGTTGAAAATAACATCGAAACCGAAGTGCTGGAGATGTTCAGAGACGTCAAAGAGGGAGCAGAATGGAGTGGCGATCTGGCACATCAAAGTTTATTCTACTTGTGGCGAAAAATTAAGGATATTAGTATCAATGCCAGCGAAGTCAGTCCCGCCATTTCAGCCGACAGCGTTGTTCAAGAGGGACACGTAGATGACAAAAATGGAGTTTCGATTTACAGTGAATATGCAACGGGTAAggtgaaacaagaaaaaggaaacCATGAAAACCTAAACGTGATAAATATGGCTGAGTTCCTTCCAGTTGGAGATAATGTTTTGAATATCCGAGACGAGATTTCGCATAATCTTTCAGCAGTCGACGCAGATTGTAAAACTATTGATACTACTCTCTACGAGATCGACGCACCTGGAACGTTAGTATCGTTCGAAAATATCAACGAAAATCCACAAGAAGGGACGAAGCAGATAAAATTGGAACATCAATCCACTGACGAAGGGCCGACGGAGCTTATAGAATTGCGAAGTCAATGCATTGACGAAAAGCCGAAAAAACCGACTTCTCCGAACCCATCGACGCCAAATTCCTTCCCAAAAAGGAGGAGTttccgaaaaataaatcaagcaAAACGTAAAGTGCCAGCAATACTTACATCCGACGAATGA
- Protein Sequence
- METAESADSLIPLKVSVEGHNKKIIWKKCIKEVIGTTETADSSVISRSTLKRKRTNVERRYTNADLEKALDAVKTGMPLKRASNLYKIPRTTLLYKKRGTLPPVLTSPGPKCILGEENERKLVEWILHMNQSGFPLTRVQLLDSVQLLIKHLKIKTHFKDNRPGRHWYKAFKNRNREIAEKVTQNLTRNQADLSDKKLRGWFCEVQKYFQSNSLLNIDASRVFNCDESAFFLSPNDGSVLTKKGDKTVYNFIKNHEKECLTTLICGSASGELAPPMVHFPYKRIPGYVAARMPRDWAISHSDSGWMTGETFFEYVANVFYRWLLKIKVVFPVVLFVDWHTSHLTMALSDFCREKGIKLVSLYPNASHILQPIDVAFFHSLKGIWGNVVRNWRLENNDQRLRREDFAPLLQKAIDTLDTKSILKSGFRTTGLYPFSADRIDYQNIFTNYDSSEKIPPVTETEGSRYKELLEYVENNIETEVLEMFRDVKEGAEWSGDLAHQSLFYLWRKIKDISINASEVSPAISADSVVQEGHVDDKNGVSIYSEYATGKVKQEKGNHENLNVINMAEFLPVGDNVLNIRDEISHNLSAVDADCKTIDTTLYEIDAPGTLVSFENINENPQEGTKQIKLEHQSTDEGPTELIELRSQCIDEKPKKPTSPNPSTPNSFPKRRSFRKINQAKRKVPAILTSDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00297470;
- 90% Identity
- iTF_00291456;
- 80% Identity
- -