Ccin007878.1
Basic Information
- Insect
- Cephus cinctus
- Gene Symbol
- Usf1
- Assembly
- GCA_000341935.1
- Location
- NW:3977720-3980115[-]
Transcription Factor Domain
- TF Family
- TSC22
- Domain
- TSC22 domain
- PFAM
- PF01166
- TF Group
- Basic Domians group
- Description
- These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Drosophila protein bunched [1] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.033 1.8e+02 1.7 0.0 11 39 130 159 129 167 0.81 2 2 1.9e-07 0.001 18.5 0.4 17 48 212 243 209 247 0.93
Sequence Information
- Coding Sequence
- ATGATACTTATTTTCAGTGGAGTTTCCGCCAAGGTCGAGAACGGTGCTGGTATTGTCATCGAGGAGGCCGAAATTGTTGATTGTGATGGTGAAGCTGTTGGAGAAGATGGTATGCGTTATCAAGAAACTCTAGCATACAGAGTGGTACAAGTGAATGGTACTACTGCTGGTAACGAAATAGAATTACCAGTTGCTCAACAAGCAAACAATACTGTGCAAGTCCTAACGTCTCCTATCAATGGTCAATTCTATGTGATTGGTAATGCAAATGACGTCTTTACAACTGCTCAAACATCCAGATCACTAACTCCTAGAGGAACTACACTTCAGATTGAAACACCACGCTGCACTACAACTGGATTAAAGAAGAGAGATGAAAGGAGAAGAGCTACACATAACGAGGTAGAACGTCGTCGTCgtgataaaatcaataattggATAGCAAAACtaggaaaaataattcctgAATGTAATTCCACAACTTCAAATTCTAATGGCAATGGAAGTAGCGGTGGTGAAGGAAAAGCAAACTATGAAACTCAGAGTAAAGGTGGTATCCTGGCAAAAGCTTGTGAATACATTGGCGAACTGCGTACGGCGAATCAAGGTTTGGGCCAGTGTTTAAgggataatgaaaaattacgcCAGGAGATAAACGCTCTAAAGCAGCTGATCGGTCAGCTGAAACGTGAAAATGTCCTCTTGAGATCACAAGTATCAAATGGCACTACAAGTTCAGACGCAATACATCTGAGTCCTTAA
- Protein Sequence
- MILIFSGVSAKVENGAGIVIEEAEIVDCDGEAVGEDGMRYQETLAYRVVQVNGTTAGNEIELPVAQQANNTVQVLTSPINGQFYVIGNANDVFTTAQTSRSLTPRGTTLQIETPRCTTTGLKKRDERRRATHNEVERRRRDKINNWIAKLGKIIPECNSTTSNSNGNGSSGGEGKANYETQSKGGILAKACEYIGELRTANQGLGQCLRDNEKLRQEINALKQLIGQLKRENVLLRSQVSNGTTSSDAIHLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119990;
- 90% Identity
- iTF_00294177;
- 80% Identity
- iTF_00292003;