Ccan035763.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637498.1:51467-60851[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.083 1.7e+03 0.4 0.2 23 47 121 145 117 150 0.87 2 10 0.034 7e+02 1.6 0.4 21 44 147 170 145 174 0.89 3 10 5.7e-05 1.2 10.5 0.2 20 43 173 197 167 202 0.84 4 10 0.0038 77 4.7 0.0 21 47 203 229 199 236 0.85 5 10 0.067 1.4e+03 0.7 0.2 21 43 231 253 227 258 0.86 6 10 0.00043 8.7 7.7 0.1 18 48 255 286 249 290 0.81 7 10 0.0035 71 4.8 0.1 21 47 287 313 283 320 0.84 8 10 0.34 6.9e+03 -1.6 0.0 21 43 315 337 310 341 0.80 9 10 2.9e-05 0.58 11.5 0.0 21 43 371 393 363 399 0.88 10 10 0.0075 1.5e+02 3.7 0.0 22 46 400 424 394 426 0.89
Sequence Information
- Coding Sequence
- ATGACAACGAACGCCAGTGACAATGAAATGGATACAAAGTGGTTGAAAGATGAAGATGTGATCATCAAATTGGAACCAGAACCAGGGTTGGAAGAAGCAGACCTGAAGGTGAAGACTGAGTGCGAGAGCGAGACCGCAGGCTCGTGCGGGAGCGAGACGGAGCAACAAGACGCATGTGTGAAGGAGGAGAGAGATGGTGAGAGTGGGACAGCGCAGCAGGAGCAACACTCGGAGACACGACGTTGGCCGGCCCTCATCATCCACCCAGCACGAGAGGCCCCTGACACTGCCGCGTCGCAGCGCGGGGCTCGGGCCGGGTCCGGGGAGGCCCCGGCCGGAGGAGACCCCGCAGGCGTCCCCGACCCGACCTGCTGTCGTGTATGCGACAAGAAGTTCAAGAAAGCGAGCGCATTGAAGGTTCATGTGCGGCTACACACAGGAGAACAACCCTACCCCTGCAATACGTGCGACAAGCGGTTCAATCAATTGATCCACCTACAAAGACATGAACAAGTTCACAGTGAACAAAAGTCTTTCACCTGTCCAATATGTGATAAACAGTTCACGCAGCCCAGCGACTTGAAGCGACACGGAAGGATCCACACAGGAGAGAGACCATACAAATGTGATATCTGTCTTAAAGGGTTCACACAAATGGGCGCGTTGAGGACGCACGCGCGGGTTCACACAGGGGAGAAACCTTACGCCTGCAACATGTGTGAGAAACGGTTCGCGCAACAGCAACAGTTAAAGGTACATGAACGTAGTCACACGGGAGAAAAACCATATAGTTGCAAAATGTGTGAAAAGCGGTTCACGAAAGCGGTCGATTTACGAAGACACGTACGCGTGCACACAGGAGAGAAACCATTCTCCTGTAGCATTTGCCAAAAGGAGTTCTCAGATGTGTTGTATTTACGACGGCATGAGCGGATACATACGGGGGAAAAACCTTATGCGTGCGGAACGTGTCAAAAAGAATTTACAGAATGGGGCAGTTTGAAGAGACATGAGCGAGTACATACAGGGGACAGGCCCTACCCTTGTCAAACATGCGGGAAGCGGTTTAAAATACTGCACTCCTTAAAAATACATAACCGAATTCACACTGGAGAAAAGCCCTATACTTGTCCGATTTGCGAAAAAAAGTTTATAGACTCCAACAGCATGAGGAAGCACGAGCGGATCCACATAGGGGAGAAACCATACTCGTGCGACATATGCCTGAAGAATTTCACTGAAATGGGTAGTTTGAGGAAACATTCTCGACTTCACACGTGA
- Protein Sequence
- MTTNASDNEMDTKWLKDEDVIIKLEPEPGLEEADLKVKTECESETAGSCGSETEQQDACVKEERDGESGTAQQEQHSETRRWPALIIHPAREAPDTAASQRGARAGSGEAPAGGDPAGVPDPTCCRVCDKKFKKASALKVHVRLHTGEQPYPCNTCDKRFNQLIHLQRHEQVHSEQKSFTCPICDKQFTQPSDLKRHGRIHTGERPYKCDICLKGFTQMGALRTHARVHTGEKPYACNMCEKRFAQQQQLKVHERSHTGEKPYSCKMCEKRFTKAVDLRRHVRVHTGEKPFSCSICQKEFSDVLYLRRHERIHTGEKPYACGTCQKEFTEWGSLKRHERVHTGDRPYPCQTCGKRFKILHSLKIHNRIHTGEKPYTCPICEKKFIDSNSMRKHERIHIGEKPYSCDICLKNFTEMGSLRKHSRLHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289873;
- 90% Identity
- iTF_00289873;
- 80% Identity
- iTF_00289873;