Ccan028070.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637489.1:14783277-14799039[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.026 2 10.1 3.0 1 23 303 325 303 325 0.96 2 12 0.0011 0.087 14.4 0.4 2 23 333 354 332 354 0.94 3 12 0.38 29 6.5 0.8 1 23 358 380 358 380 0.97 4 12 0.0017 0.13 13.9 0.9 1 23 385 408 385 408 0.98 5 12 0.015 1.2 10.9 0.1 1 23 412 435 412 435 0.94 6 12 0.019 1.5 10.6 0.2 3 21 452 470 451 475 0.92 7 12 0.041 3.1 9.5 0.3 3 23 485 506 485 506 0.93 8 12 0.47 36 6.2 0.2 3 23 526 547 525 547 0.96 9 12 1.4e-05 0.0011 20.4 0.5 1 23 558 580 558 580 0.98 10 12 4.2e-05 0.0032 18.9 2.7 1 23 586 608 586 608 0.99 11 12 0.015 1.2 10.9 2.7 1 23 614 636 614 636 0.98 12 12 7.1e-05 0.0055 18.2 0.2 1 23 642 665 642 665 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACGTGAAAGTGTGTCGAATATGCCTTGTTATGGGTGTAAAGATGCATAACTTGCATTCGTACCCATTGTATGGCTACTTTGAATCTCTTATTGGGATCAACCCACTAAGCATGATGGAGCTGCCTCCATATGGCTGTTACGAATGCACTGCGCTAATGATAAAACTATATCATTTCAAGGAGAAATGTCTCATCGGCCAGGCGGAGCTGTATGCCATGTTACAGGCTACAGGGAAGATCACAGTACAAGCATTAAATAACATAGACCGCCACCAACTAAGACTTATCTCAAATCTAACTATCAACCATGACAATAACATAACATCACTTGTTCATGATGACAAACTAGACATTAAACAAGAAAAACCTAAACAAGATACTGAAAATTATCACATAGAAGTGGACTGTATAAAACaagaggattatgatgatgattttctGATGACAAATATGTCAAGTGATGATGACGAGCCACTGTCTGTGAGGAAGAGTGTGAAGGAGACAAAGAAGGAGAAGAAGAAAAGGGGACGGAAGAGGAAAGAAGTTAGTTCGGATTGTAACAGAGATTTGGAGCATGTTGAGACAACGGACTTATCAACTGCACCAGAGCCAGATTGCGAGGTCCCAGATGTCCCAGAGAATGAAGAGGTCTCCGAGGTCCCAGAAGTCCCAGAGATCCCAGAGGCCCCTAAAAAGAAGCGCGGCCGACCGCGGCTAAAGGAGGCTAAAGAGGCTAAAGAGGTTAAAGAGACGAAGACGCGGCGGACAAGGAACACGGGGGGAGTGGGGGTGGACGACATTGACTTGGAGGATTATGTCACTATTGTCAAGTTGACTACTGAGGAGCAGTTAGCTGAGATACAGAAGCGGCAGCAGTCTTCCAACTATTTGAACGCGCCGTTCCAATGCAATCTCTGTTATAAGGGCTTCATAGACACGCATGCGTGGAAACATCACGTCGGAAAACACGACCCGagcGCGGGTGAGGTGGAGTGCGGTATCTGTAAGTTCCGTTTCCGGTCTCGACGCGCGCTGCAAAAACACGCCGCTAATCACGAGAAGAAGTACGCCTGCCGATCTTGCCCCTATATCTCTAAGACcacAACGCAAGCGAAACAGCACCAGAGGTGGCATAAAGGAGTTACATACAAATGCCAGTACTGTGACGAGATATCCACcAAGTGGACATCCTACCTCAGCCACGTGCGAATAAAACACCCCTCCGAGTTCATTTGCGGTGTGTGTGGCTATTCCTACGTCAGTAAATTGGGACTGGCCATGCATAAAACTATGATGCATAAAGACTATGTGGAAAAGACGGAGCCGGACGGTGAAAAAGGCCCGTTCTGCCAGGATTGCAACGTGCAGTTCGTTACGGAAGAAGCGTGGAAGCGGCATATGGTCACCTCCGCCAAGCACGCCCCTACTAACGATTTCAAGAATGGATGCAGGGCTTGTGGCAGCGTGTTCCCGTCGAGCGAGGAGCTGCGGCTGCACCaccgcgccgcgcacgcgcgccgccgccccaAGAACTACGGCAAGAAGCAGGCGCACGCCTGGCCCGCACCCTGCGAACACTGCTCGGAGGAGATCCCTAACGCGCGCGAGTACTGGACCCACTTCCGCCGCGCGCACCCCGACAAGCCGTACCCCATACAGAAGAACTACATCTGCGATATTTGCGGAAAAAGCTTCAGGGGCAACGCGTTCCTGGTATACCACAAGCGAACCCACTTTGAGGAGCGTGCCTACAAATGCGCCCAGTGTCCCAAGGCCTTCCACAACCGGACCAATCTTCAGATGCACGAGAAAACGCACTCCGACGCACGGCCTTATCCGTGTACGGTGTGCTTCAAGGCTTTCAAGTGCAAGGGAGCTCTAGATCGGCATTTCAGgAGCCACACTGGCGTAAAACCCTACGAATGCGAAGTCTGCGGCAAAGCGTTCGGGCAGTCCAACAGCAGGAAGCTCCACGTACGGACAGTGCACCTCCGCCAGCCCGCGCCGTACGTCAGCCGCGCTAGGAAGAGACGCCCGCCGCTTGAATAG
- Protein Sequence
- MEDVKVCRICLVMGVKMHNLHSYPLYGYFESLIGINPLSMMELPPYGCYECTALMIKLYHFKEKCLIGQAELYAMLQATGKITVQALNNIDRHQLRLISNLTINHDNNITSLVHDDKLDIKQEKPKQDTENYHIEVDCIKQEDYDDDFLMTNMSSDDDEPLSVRKSVKETKKEKKKRGRKRKEVSSDCNRDLEHVETTDLSTAPEPDCEVPDVPENEEVSEVPEVPEIPEAPKKKRGRPRLKEAKEAKEVKETKTRRTRNTGGVGVDDIDLEDYVTIVKLTTEEQLAEIQKRQQSSNYLNAPFQCNLCYKGFIDTHAWKHHVGKHDPSAGEVECGICKFRFRSRRALQKHAANHEKKYACRSCPYISKTTTQAKQHQRWHKGVTYKCQYCDEISTKWTSYLSHVRIKHPSEFICGVCGYSYVSKLGLAMHKTMMHKDYVEKTEPDGEKGPFCQDCNVQFVTEEAWKRHMVTSAKHAPTNDFKNGCRACGSVFPSSEELRLHHRAAHARRRPKNYGKKQAHAWPAPCEHCSEEIPNAREYWTHFRRAHPDKPYPIQKNYICDICGKSFRGNAFLVYHKRTHFEERAYKCAQCPKAFHNRTNLQMHEKTHSDARPYPCTVCFKAFKCKGALDRHFRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLRQPAPYVSRARKRRPPLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410638;
- 90% Identity
- iTF_00656442;
- 80% Identity
- -