Ccan021526.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637483.1:15351808-15364365[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-11 4.8e-08 33.7 0.0 4 39 170 206 167 210 0.89 2 4 5e-11 1.1e-07 32.5 0.1 2 39 222 259 221 262 0.92 3 4 8.1e-15 1.8e-11 44.7 0.0 2 45 277 321 276 321 0.96 4 4 1.3e-18 3e-15 56.8 0.0 1 43 328 371 328 373 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGTCGCGGTCTCCCGCTGGTCAAGCGCGAACCGGCCTCCGAGGACGACGACTCGCAGTACGCACACGGCTTCCTCACCAACCAGATACCATCACTGGAGCTCCGCGCGGTAAAACTAGAGGCCGGTATAGACGACAATGCGTCTGCGCGCATATTACGACGCCTACAGGGTCCGGAGGGCCTGGAGGAGTTGgcaccgccggcgccggcgggccCCGCCGCGACCCCTGTCTCGGTCAAGCAGGAGCCTGATGCGGAACCCGCCGTCACGCTCGAGACCCTCGCGCCGGCGCCGCATTCGGATACACTGGGTGCCATGCTCATCGATAGACACAAGACACTGCCCGGAGCAAATGACGCCGATTCCATGTACTTTATGCCTCTCCTCACTGTTAAAGACGAACCTCTCTCTGAAGAGCAACACCACCTGAGTGGGTCAGACACGAGCGACTCGAGCACGCAGCCCGATCGCCGCGGCAGCCCCAAGAACTGGACGCAGCAGGACATGGAACTAGCACTAGAGGCACTTCGGACACACAACATGAGCCTCACTAAGGCATCTGCGACATACGGCATTCCATCGACGACACTCTGGCAGCGAGCGCACCGACTCGGCATCGACACGCCCAAGAAGGAAGGTGCTTCCAAGTCCTGGAGTGAAGCTGATTTGAGAGGAGCGCTTCACGCTTTGCGGTGTGGAGCCATTTCAGCCAACAAGGCCAGCAAGGCTTACGGCATCCCCAGCAGCACCTTGTACAAGATCGCTCGTCGGGAGGGCATCCGTCTTGCGGCTCCGTTCAATGCGGCTCCCACGGCGTGGCGGAGAGCTGACTTGGAGAGAGCGCTCGCTTCTATCCGCTGCGGCGCAGCTTCTGTGCAGCGGGCTGCTTCGCAATTCGGGATACCCACCGGCACGCTGTACGGGCGGTGCAAACGCGAGGGTATCGAACTGTCCCGGTCCAACCCGACACCTTGGTCCGAagatgccatgggagaggcttTAGAAGCCGTCAGGGTTGGGCAAATGTCGATAAACCAAGCAGCGATCCACTATAACCTGCCTTATTCTTCGCTCTACGGACGGTTCAAGAGGTGTAAATATCAAAGTCCTCAAGCAATAACCCAACAGTCGCTGCCAGAGACTGAGGTCTTAGAACAGCCACCACAGATGTACTTCCAGCATCAGATGCCGACAATGCTAGAGGAGTATCATCAGAGTTACATGGCGGAACCGGATATGCACGCTAGTGTCATTCAGGAACCCTATGGGATGTACTATCAAGGTACGAATAAGTCTGGACTAAGCCCAGATTAG
- Protein Sequence
- MPGRGLPLVKREPASEDDDSQYAHGFLTNQIPSLELRAVKLEAGIDDNASARILRRLQGPEGLEELAPPAPAGPAATPVSVKQEPDAEPAVTLETLAPAPHSDTLGAMLIDRHKTLPGANDADSMYFMPLLTVKDEPLSEEQHHLSGSDTSDSSTQPDRRGSPKNWTQQDMELALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRCGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGAASVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQAITQQSLPETEVLEQPPQMYFQHQMPTMLEEYHQSYMAEPDMHASVIQEPYGMYYQGTNKSGLSPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- iTF_00659381;
- 80% Identity
- -