Ccan016444.3
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- rfx3_1
- Assembly
- GCA_951800055.1
- Location
- OX637479.1:12756301-12771314[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.021 2.1e+02 3.7 0.0 3 21 39 57 37 68 0.86 2 3 8.9e-37 9e-33 113.9 0.1 3 78 98 173 96 174 0.97 3 3 4 4e+04 -3.9 0.0 25 33 1056 1064 1044 1070 0.75
Sequence Information
- Coding Sequence
- ATGTTTACAACGCGGCTGAGTTCTCGTACAACGTGGTCGTTGGCCCCGACGAGGCGACGTCCCCCGCGGCCGCGCCCGCCACGCCGCCGCAGCCGCGCATGCCGCCCGCGGCCCGCCACCGTGCAGTGGTTACTCGATAACTACGAGACTGCTGATGGTGGCGTTGTTAGCGAGACTATGTTTACAACGCGGCTGAGTTCTCGTACAACGTGGTCGTTGGCCCCGACGAGGCGACGTCCCCCGCGGCCGCGCCCGCCACGCCGCCGCAGCCGCGCATGCCGCCCGCGGCCCGCCACCGTGCAGTGGTTACTCGATAACTACGAGACTGCTGATGGTGTGTCCCTGCCCCGGTCTACTCTCTACGCGCACTATTTACGTCACTGCTCGGCGCACCGACTCGACCCCGTGAACGCGGCGTCATTCGGCAAGCTTATACGTTCCGTGTTCGTCGGACTTCGTACCCGTCGTCTCGGGACTAGGGGCAACTCCAAGTACCACTACTATGGCATCAGGGCAAAAGCCAGCGTGCCTGCCTCGCCTCCGCCCGACCCTAACGACGAAAAGGCCGACGTTCAAGATATGCAGTTAGCTCGCTCGTGTCCAGGAGGCTCGGTCGCGCGACGCCTCGCCCCCGGCGCCGGCGGGCGGGGTGCCCGGGCTGGCGCACCGGCAGTACCTGGGCGCGGTGGTGGCCggctcgccgcccgcgccgcccgcgctgcCCGCCGCCGCGGCGCTCGAGCTGCCGCCGTCCGCGCTCACCGCGCTGCAGGACCACCACCGGAGGCTCGGTCGCGCGACGCCTCGCCCCCGGCGCCGGCGGGCGGGGTGCCCGGGCTGGCGCACCGGCAGTACCTGGGCGCGGTGGTGGCCggctcgccgcccgcgccgcccgcgctgcCCGCCGCCGCGGCGCTCGAGCTGCCGCCGTCCGCGCTCACCGCGCTGCAGGACCACCACCGTGAACACGGTGTGGAATTCCTAGAGGCGGTGGCGGCGCTAGACATCGCGGCTGTGGAGCGCTCCCGGCGCAACTTCTGGCGGCGCCCGCCGCCCGCGCTCTGCCGCCGCGTGCTGTGCAGGCTCGCCGCGCGCAAGGACGTGGCGGCATGGCTGCGACGCGCCGACCTCGAGCTCTATCAGCGCGCGGTGGAACTTCTGCTGCCCGACGTGCTTCGCCCCATACCGCCGCAGCTCACGCAGAATGCTCTTAACGTGAGTAATGTGGAAGAAAAATGGATCGAACAACCTTTGGATCACTTTAATCCAAATGAAAAAGGAACATACAAAATGAGATACTTCGAGAATCTCGACCTGTGGCAACCAAATGCACCTATTTACGTGTGGATTGGTGGAGAACGGGAGCAATCGCCGTTGTACATAGAGACCTATTATGACACGCTACTGATGATTCAAATCGCGAAGGAAACAAAAGGTGCTCTCTTTGCTACGGAACACAGGTACTACGGAAACAGCAAGCCTAACTTTCCACATGACGATGCTATTCAGTATTATAGATTCTTGAGTTCCCGACAAGCGCTGGCTGATATCGCGAGTCTAATAAAGATGTTGAAATCTGATACGAAGTACGCGTTATCGAAGGTGGTTGTGATCGGCGGATCGTACTCAGGCAACCTTGCTGCCTGGATGCGGGAGCTATACCCTGAACTAGTGGACGCAGCCATCGCAGCCAGCGCGCCGGATAAATCGCAAGATGGCCAGCCTCTAGACATTAAAAATATGTGCCAGAATTACAAATCTGCTAACAAATTGACGCTGGATTTTCCACATCTGCATCCCACTAATTCTTCTCATATGTTCCGACATTCTAACTGTTCGAATATTGACTTTAAAACAATTGATTGGTCTGGTCCGTGGACATACCAAACTTGTACAGAATTCGGTTACTTGCAAACAACATCATCAGAAAAACAACCCTTCGTACATTGGAATCCAGTGGAGTTTTGGGTCAAAACATGCAAAGGTCTTATTAAAGGAGATGTCGAGAAGAGAATTGATGAAGGGGTAGCGAAGACCAACAAGATGTACGGTGGGTTGTCTCCGAATGTGAGTCAGGTGGTGTTTACACACGGGGACATGGATCCTTGGCACCCGCTTGGCATCCAGATGGATCTGGCACCAGATGCGATCCGCAACTTCGCGAAAAGCCTCGAATCGGCTTTAGCCGCGGGTTCCGGCTGCGCGCCGGCGGCCGCGAGCCGCGCGCAGGCGTCGGCCGCCGCGGCGCTCTCCGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGCGCCGTGCTCGCCAACCAGCACCAGATCCAGCAGGTATGTTGGCTAAACTCCGGGCCTAGCGCTAGCGGCGGGTTCCGGCTGCGCGCCGGCGGCCGCGAGCCGCGCGCAGGCGTCGGCCGCCGCGGCGCTCTCCGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGCGCCCGCTAGCGGCGGGTTCCGGCTGCGCGCCGGCGGCCGCGAGCCGCGCGCAGGCGTCGGCCGCCGCGGCGCTCTCCGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGCGCCGTGCTCGCCAACCAGCACCAGATCCAGCAGATGCTATCAGACCTGAACCGAGTGGACTTCCGCGTGGTACGTGAACAGGCGGCGTGGGCGTGTTCCTGTGGCAGCGCGGCCACTGCGCACCGCCTCGAGGCAGACTTCAAGGCGACGCTCGGACGCGGCGCAACGCTGGAGCAGTGGGCCGCGTGGCTGGAGGGCTGCGTGCGCGGCGCGCTGGCCGcgcacgagcgccgcgccgactacacggcgcgcgcgcgccgcctgcTGCTCGACTGGTCCTTCTACTCGTCGCTCGTCATCCGCGAGCTCACGCTGCGGTCAGTACACGTGCAGTATTGTACAGTACACGTTCAGGCGACGCTGGAGCAGTGGGCCGCGTGGCTGGAGGGCTGCGTGCGCGGCGCGCTGGCCGcgcacgagcgccgcgccgactacacggcgcgcgcgcgccgcctgcTGCTCGACTGGTCCTTCTACTCGTCGCTCGTCATCCGCGAGCTCACGCTGCGGTCAGCGGCGTCGTTCGGCTCGTTCCACCTGATCCGGCTGTTGTACGACGAGTACGTGTCGTACCTGATCGAGCGCCGCGTCGCGCAACACCACCGCGCGCCGCCCATCGCCGTCATGCAGCGCCCACCCGAGGAAGAAGAGGAAGTGAGCGAGGAGGCGCCGAGGGAAGACGAGGAAGAGGGGGAGGGGGACTGGGACTGGGGCGACGAGGAGGAAGACGAGGACGAACCTCTGCCCTGCAAGAAGGCCAAGTTGCCGGAGCCGTAA
- Protein Sequence
- MFTTRLSSRTTWSLAPTRRRPPRPRPPRRRSRACRPRPATVQWLLDNYETADGGVVSETMFTTRLSSRTTWSLAPTRRRPPRPRPPRRRSRACRPRPATVQWLLDNYETADGVSLPRSTLYAHYLRHCSAHRLDPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKASVPASPPPDPNDEKADVQDMQLARSCPGGSVARRLAPGAGGRGARAGAPAVPGRGGGRLAARAARAARRRGARAAAVRAHRAAGPPPEARSRDASPPAPAGGVPGLAHRQYLGAVVAGSPPAPPALPAAAALELPPSALTALQDHHREHGVEFLEAVAALDIAAVERSRRNFWRRPPPALCRRVLCRLAARKDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQNALNVSNVEEKWIEQPLDHFNPNEKGTYKMRYFENLDLWQPNAPIYVWIGGEREQSPLYIETYYDTLLMIQIAKETKGALFATEHRYYGNSKPNFPHDDAIQYYRFLSSRQALADIASLIKMLKSDTKYALSKVVVIGGSYSGNLAAWMRELYPELVDAAIAASAPDKSQDGQPLDIKNMCQNYKSANKLTLDFPHLHPTNSSHMFRHSNCSNIDFKTIDWSGPWTYQTCTEFGYLQTTSSEKQPFVHWNPVEFWVKTCKGLIKGDVEKRIDEGVAKTNKMYGGLSPNVSQVVFTHGDMDPWHPLGIQMDLAPDAIRNFAKSLESALAAGSGCAPAAASRAQASAAAALSAALRRYTSLNHLAQAARAVLANQHQIQQVCWLNSGPSASGGFRLRAGGREPRAGVGRRGALRRAAPLHLAQPPRAGRARPLAAGSGCAPAAASRAQASAAAALSAALRRYTSLNHLAQAARAVLANQHQIQQMLSDLNRVDFRVVREQAAWACSCGSAATAHRLEADFKATLGRGATLEQWAAWLEGCVRGALAAHERRADYTARARRLLLDWSFYSSLVIRELTLRSVHVQYCTVHVQATLEQWAAWLEGCVRGALAAHERRADYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAQHHRAPPIAVMQRPPEEEEEVSEEAPREDEEEGEGDWDWGDEEEDEDEPLPCKKAKLPEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -