Clyc003855.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01000209.1:487847-490532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0002 0.016 16.3 3.0 1 23 154 177 154 177 0.98 2 18 4.2e-05 0.0034 18.4 1.0 1 23 186 209 186 209 0.96 3 18 0.015 1.2 10.3 0.6 2 23 222 244 222 244 0.97 4 18 0.00046 0.037 15.1 1.1 1 23 253 276 253 276 0.97 5 18 1.4e-05 0.0011 19.9 1.3 1 23 289 312 289 312 0.96 6 18 4.8e-05 0.0039 18.2 0.8 2 23 338 360 337 360 0.97 7 18 0.00011 0.0086 17.1 3.4 2 23 370 392 369 392 0.97 8 18 0.024 2 9.7 0.8 2 19 397 414 396 417 0.92 9 18 0.0019 0.15 13.2 0.5 2 21 422 441 422 444 0.95 10 18 0.15 12 7.2 1.9 3 23 454 475 453 475 0.95 11 18 0.005 0.4 11.9 5.7 1 23 480 503 480 503 0.94 12 18 6.6e-05 0.0053 17.8 1.8 2 23 516 538 515 538 0.97 13 18 0.028 2.3 9.5 1.6 1 23 564 587 564 588 0.94 14 18 7.3 5.8e+02 1.9 1.3 2 23 594 615 593 615 0.81 15 18 0.02 1.6 10.0 1.9 2 23 619 640 619 640 0.98 16 18 4.5 3.6e+02 2.6 2.3 3 23 648 670 646 670 0.90 17 18 0.03 2.4 9.4 0.1 1 23 706 728 706 728 0.96 18 18 0.19 15 6.9 2.0 1 23 734 757 734 757 0.96
Sequence Information
- Coding Sequence
- atgtcTATTAAGGAAgaaacagttaaaataaaaatcgaagaTGAGAGCGACCGTAAGGATCCAACATCATTCTTGCCAGAGGAGGAGATGTCTtatgaaattaagaaaaagaaaaaaaagaagaaaaaagataaacaagaGGATCCCTTTAAAGATATAGAAGATAGGACGGAGTCACCCGCAGGCGCAGGCGTGGTGATGTTTAATGATGCCACATTAGACCCAgaagttaatataaaagtagagaACATTGAAGTTGAACTGGATTTTAATGATtttgcCAATGATAACGGTCTCATGGTGGAAGGACCTCATAGTGAGGACAGTCAAGAACCTGCCGTTAAATTAGAGCAACAAAACAAAGAAGCGGTTTTGTTGACATTCGAGAGTATTATTAACGAAAACAAAATGTTCGGGATCAGCGAGGCGATTGCCACGATGCCTCCATCAGCGCCAAACTACGTATGTAAAGTTTGCCACCTAGTCTTTCAGTCACCTAAAACGTTAAGGATGCACCAGAAACGAAAACACAAAGTGTACAGACGGTCCTTTAAGCACATTTGCGACTACTGTGGTATGTCGTACGAACAGAAGAACAGTTTAGTCGCGCACATTAAGAGAAAACACGGACCTAACGCTATACCAGATGATAGAGAAGAAAGAACATGCGAAGTGTGTGCGCTAGTCTTCAAGGGACTTAATAGGTTAAGAATGCATATGAGACGGAAGCACGGCTCCTTCCAGGATTCTTTTAAGCACGTCTGCAATGAATGTGGTCTCACCTACGATAAATACAGGAGCCTCATAGTACATATTCAAAGGAAACATACAAACGATAATAAGACAAAAGTGATGAACGAATGGTTCAATTGTCCGTTCTGCCCGAAAGTTTTCACCCGACGAGAAACGTATGCAAGACACGTGCAAAGAAAGCATCGTATTGACGACGAAAATGAAGATATGAAGCCGGATCTGTTGGAGAATTGCAAAAACGAAGAAACTGGAGAGATTACTTGTAAAGAATGCCCTCTAGTCTTTTCATCGCTTAATTTCTTAAAACTGCACATGAGAAGAAAGCACAATGCTCTAAGAGAAGATTTTCGTCTCAAATGCAAAATTTGTCATCTCTCCTACAGTAAGATTGAGAGTCTGAAACGGCATATTCGTAGAAAACACGATAAGGGTTCATATTGTGAGGTTTGCAACAAGCAATTTGATACAAGGGAGTCGTACTTAAATCATTCGCATATGAAAGCGATTAGGGAATGCACAGTTTGCGGTTTGATCTTCGCGTCCAAAGGTGGCTTGGGAAAACACATGAGGTGTACACACAAAGTCGATGAACCAAAAACTGTATTCTGTTCGTTATGCAATGAAGGATTTCATGATAAGAGGCAGCTTAAGCCACATTACATGAAGGTGCATTTAAAGGTGTCGTATACATGCCACTTCTGTAGTAAGCAATTTAAGGCGAAAGAGAGTTATAGACGGCATATACTGTTCAAACATCCCAGTCACAATCAGACTAGTAATAGTCAACTTCAGAAGTGTGAACGCTGCCCAGAGACATTCAAAGATGAGTTTGAGCTGTGTAAACATATCAACACAGTTCATACTATGGCTCTCGAAAGTGGAACGATGGAGAATGACGTCAAAATCAAGAAGGAAGATCCAGATATCAAAGACTGCTTCCAATGTACAAAGTGTCCAGAAAACTACTTAACTTGGGAACAGCTTAGGCTGCATTACGAGCAGAATCACCACATGACAGAAGACACGCAGTGTCAGATTTGTGGCAACATTATGCCCGCGAACGAGTTACAGAAACATATTAAGAACACGCACGCGTTAGCCCAATGCAGGTATTGCGAGTTCCAAACAACGAACCGCGCGAGTATGACTCAACACATGCTGCGACATAAAAACGCAACGACGTTACATTGCGACTACACTGGATGCAAATACAAGACGTTTTACGAAGTCGCCATGGAGAAACACAGGCGTAAACACAGAGACATTGGCGTCAAACTCCAATGTTCGCAGTGCCCATTCCAATCGATGaacaaatatatcttaaaatatcatGAAGAAGCACACATGACGGGCAAGAAAAGGTACGCTTGCGATCAGTGCGATTATGCGACAATCTTGCCCGCTAACTTAGTGCAACACAAGTACAAGCATTCAGCAGAAAAGAGATTCAAATGCGAAGTTTGTCCTTTTGCCACGAAGTATAATACGTCGTTGCGCTTCCACGTcaagaaaaaacattgtgaTCTCCCTACTTTCAGttaa
- Protein Sequence
- MSIKEETVKIKIEDESDRKDPTSFLPEEEMSYEIKKKKKKKKKDKQEDPFKDIEDRTESPAGAGVVMFNDATLDPEVNIKVENIEVELDFNDFANDNGLMVEGPHSEDSQEPAVKLEQQNKEAVLLTFESIINENKMFGISEAIATMPPSAPNYVCKVCHLVFQSPKTLRMHQKRKHKVYRRSFKHICDYCGMSYEQKNSLVAHIKRKHGPNAIPDDREERTCEVCALVFKGLNRLRMHMRRKHGSFQDSFKHVCNECGLTYDKYRSLIVHIQRKHTNDNKTKVMNEWFNCPFCPKVFTRRETYARHVQRKHRIDDENEDMKPDLLENCKNEETGEITCKECPLVFSSLNFLKLHMRRKHNALREDFRLKCKICHLSYSKIESLKRHIRRKHDKGSYCEVCNKQFDTRESYLNHSHMKAIRECTVCGLIFASKGGLGKHMRCTHKVDEPKTVFCSLCNEGFHDKRQLKPHYMKVHLKVSYTCHFCSKQFKAKESYRRHILFKHPSHNQTSNSQLQKCERCPETFKDEFELCKHINTVHTMALESGTMENDVKIKKEDPDIKDCFQCTKCPENYLTWEQLRLHYEQNHHMTEDTQCQICGNIMPANELQKHIKNTHALAQCRYCEFQTTNRASMTQHMLRHKNATTLHCDYTGCKYKTFYEVAMEKHRRKHRDIGVKLQCSQCPFQSMNKYILKYHEEAHMTGKKRYACDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00673701;
- 90% Identity
- iTF_00025415;
- 80% Identity
- -