Clyc016331.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- -
- Assembly
- GCA_002930495.1
- Location
- MOOZ01001723.1:78116-85083[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 7.6 6.1e+02 1.8 0.3 1 23 104 127 104 127 0.90 2 27 0.001 0.084 14.0 0.7 2 23 197 218 196 218 0.97 3 27 1.4 1.1e+02 4.2 0.4 1 23 222 244 222 244 0.81 4 27 0.044 3.6 8.9 5.3 1 23 249 272 249 272 0.95 5 27 3.9 3.1e+02 2.8 1.5 2 23 280 302 279 302 0.89 6 27 5.2e-05 0.0042 18.1 0.9 3 23 311 332 309 332 0.94 7 27 0.00056 0.045 14.8 1.6 1 23 338 360 338 360 0.98 8 27 2.2e-06 0.00017 22.5 1.4 1 23 366 388 366 388 0.99 9 27 2.1 1.7e+02 3.6 0.9 1 14 394 407 394 410 0.87 10 27 0.01 0.81 10.9 0.1 1 23 478 501 478 501 0.95 11 27 0.47 38 5.7 0.0 2 23 526 548 525 548 0.93 12 27 0.029 2.3 9.5 1.4 2 23 571 592 570 592 0.97 13 27 0.016 1.2 10.3 0.6 1 23 596 618 596 618 0.97 14 27 1 83 4.6 3.6 1 22 623 644 623 646 0.87 15 27 0.057 4.6 8.5 0.5 2 23 654 676 653 676 0.94 16 27 0.00067 0.054 14.6 2.2 2 23 684 706 683 706 0.94 17 27 4e-05 0.0032 18.4 0.4 1 23 712 734 712 734 0.98 18 27 2.6e-05 0.0021 19.1 2.8 1 23 740 762 740 762 0.98 19 27 0.16 13 7.2 0.1 1 17 768 784 768 785 0.91 20 27 2.3 1.9e+02 3.5 0.4 2 23 898 920 897 920 0.90 21 27 0.47 38 5.6 8.2 2 23 943 964 942 964 0.97 22 27 2.7e-05 0.0022 19.0 1.5 1 23 968 990 968 990 0.99 23 27 0.023 1.8 9.8 0.8 2 23 1026 1048 1025 1048 0.91 24 27 0.00065 0.052 14.7 1.6 3 23 1057 1078 1056 1078 0.97 25 27 1.7e-05 0.0014 19.6 1.6 1 23 1084 1106 1084 1106 0.97 26 27 1e-06 8.4e-05 23.4 0.3 1 23 1112 1134 1112 1134 0.98 27 27 0.0011 0.085 14.0 3.9 1 23 1140 1163 1140 1163 0.97
Sequence Information
- Coding Sequence
- aTGGAATTGGAAAAATTAGgTCAACAACGTCAAGTTGTCATCAAAATTGATAACTGGGATAGTAGTACGGGTCGAATCAAAACTGAAAGAATTATCTTgaagaaaataagaaaagatGGAAGAGTCAAGGTAAAGAAAGAATCTGATGCTAAGGATAAGGAAACGGTAGAAGATGACAATGACGATAAGAAGTCTAAGAAGAAATACGAAATTAACAGATCACCGGAGCTGACGAAGAATCGTGTTAACCTCAAAGCTATACTGCAGTATTCTAACGCAACGCCGATACGCTGCCGTGGGGACATTGGTTACGCATGTTGTTTCTGCGAAGATCAGTATCCTGAACCCGCTGCCCTCAAGAAGCACACCATAGAAACCCACGACTACGATACGATGAGTATGTTGATGAAGGAAAAAAGAGTGTATTCTGTTAAACTAGATATCACGGGATTACAATGCAAAATATGTTTCGAGAACATGCAAAATGTAGAACAATTGACCGATCATCTAGTAGACTCGCATGAGAAGACGTTGTTTAAAAACATTAGGAGCTACATTATGCCTATGAAGTTCGAATCTGATGTCCTCCAGTGTTTCATATGCTCGAACACGTTTAATAACTATAAGGGATTAGTGGAACATATGAATACGCATTCTAGAAATTTCATCTGCGAAGTGTGTGATGCTGGTTTCCTGAATCGAGACATTTTACGACACCATTCTAAGATCCACGATCTAGGCTCGTACTCTTGCGATCACTGTACGAAAACGTTTAACACGTATCGGAAGAAGAAATCTCATGAGAACTCAGTACACATACGAAGGAATATGGTGAACAAGTGCGGCTTTTGCAACGAGAAATTCAACGGACATTACAAGAAGATCGTCCATTTGTCAGAAGTGCATGGAATCGATCCGACTGTGCTGAATTGTCAAGCGTGTGATAGGACGTTCAAGAACCGAAGTGCGTTACGGATTCATATACAGAGGTTTCACTTATTGGAGCGACCGTACAGTTGTACAGAATGTGAGCTAAGCTTCTACAAGAAGTTCGAGTTGGACAAGCATATGGTGAAACATACTGGAATAAAGGACTTCCAGTGTGACGTTTGCTTCAAGTCATACGGGCGGAAGAGTACCTTACGCGAACACATGAGGATTCACAAGGATGATCGACGCTTCAAGTGTGTTCACTGCGAAATGGCGTTTGTACAAAGGTGCAGTTGGCGGGGTCTACGTCAACTTCACGTTACAGTGGAAATCACTGAAGCAGACGAGGATTGCCAAGAGTTACAAGACCTAAACGCAGAGTTGAAAACATCTAGGCTGGATATCGGTCATGCTTTGGAGTTGGTGAAAAATCGTTTGAACTTCAAGGAGATTATTCGTTGCTCGAATGCAACACCATTTCGTGGGGCACGGGCTAACGGATACGCTTGCTGTTATTGCCCTGCAATATATCCCAATCCAGCGACTCTAAAGATCCACACCTTGGTCAGTCACGACGACTCCACTAAGGAGAAACTTATGAAGGAAATGAAAGTTTATTCAGTTAGACTTGATGTCACTGGACTCGAATGTAGCATTTGCTATAAAGCGATGATAAACTTAGAAGAACTAATGGATCATCTGATATACGTACACGATAAAGTGATGCACAAAAATATCAAGAATTTCCTTCTGCCTTTCAAGTTTGAGGATAATGAGTTGCGTTGCGCCCTCTGTTCAATACACTTCGTTAAATTCAAAAGTCTCTTGGAACACATGAACATGCACTACAGAAACTTCGTTTGCAATGTCTGCGGAGCTGGATTCGTGTACCGAGACATTTTGCGCCATCACTCGAAGTCTCACGAGATGGGCGTCTTCGCTTGCAACTTTTGTTCGAAACATTTCGACACGCGCCGCAAGAAAAAATCCCACGAGAGTGCTGTCCATAAGCGGGCGAACATGATCAATAAATGCGCTATTTGCGATCAGAAGTTTATCAGCTACGGGAAGAAGCTGAAGCATATGGCGCAAGACCACGGTATAAGCATACCCGTGCTGGAGTGTAGAGCCTGCGATAAGAGCTTCACAAGTCAGAACGCTTACAGGACCCACATGCACAGAGATCATTTGTTGGAGCGCAACTTTAAGTGCGACGTATGCGATATGGGCTTCTACGAGAGCGATTTGCTCAAGAACCACATGATCAAACACACTAAAGAAAAGACTCATCGCTGTAATGTGTGTTTGAAGAGTTATGGCAGGAAGAGCACCCTTCAGATGCATATGCGGATCCATGCGGACGACAGGCGGTTCAAGTGCGATCACTGCGGAATGGGTTCCCGGCATCAAGTAGAATTAGAAACGTGTTCAAGGAGAACGAATAAGAAAGCCATTAGGATTATAACGATCAACCGGGACCGGGAAGAGACTGAAACTAAATTCGCGGACACCCTAAAACGGATAACGCCGATGTATAAGCAACTGACCAACTTGAAAGAAATAGTTTTGTGTTCGAACGCAACTCTGATCAAGTCCAAAACGGACTTCGGTTACGAATGCTGCTTCTGCGATGAAAAATATCACGAACCCGGCGATCTAAAGGAGCACTGTCTAGACAATCATAAGGGAATCGAAGGCGCAAAATTCATGAATCGTCCTTTCGAGAACAGCTTCCTAGCCAAACTCGATATCACCGATTTGCGCTGTAATATATGCTACAGCAGCATCGATACTCTCGAAGATTTAATGGAGCACCTCCACGGGAAGCACAAGAGGAAAATCTTCGCGGACGTCAAAAATCAAATGATTCCCTTCAAATTCGATTCGTCTAATCTTCAATGCTGCATTTGTTTTAAAGGTTTCAATAAGTTCAAAATGTTACACGAACACATGCACACGCACTACAGACACTACACGTGCAAGGAGTGCGACGCTGGGTTCATCAACAGAAACACCCTAAGGAttcacatgcacacacacaaactGGGCATCTTCCAGTGTCAGTTTTGCGCGAAAATATTCGACACGTACCTGAAAAAACACTCTCACGAACGGTGCGTTCACAACGACGCGATACTCTTGAACAAATGCGGTTACTGTAACGAGAGGTTTAAAGATTCGAGGCAGAAGGACAAGCATTTGGCAGAAATCCACGGAGTAAAGCTACCGCCAGCGATATGCCAAACTTGCAATAGGCAGTTTGGGAGTCAGAACTCGTTGAAGATGCACATGAAAAGGGATCATTTGTTGGAGAGGAAGTTTAGCTGCACTGAATGTGATAAGAGCTTTTTTGTGAAGACTGAGCTGAGTCGGCATATGGTGAAGCATACTGGCACAAGGGAGTTCGAATGTGTGATATGTGGGAAGTCGTACGGTCGGCAGACCACGCTTCGTGAACATATGCGTATTCATGCGAACGACCGCCGACATAAATGCAGGATTTGCGGAATGGCATTCGTCCAAAAATGCAGTTGGAAAGGCCATATGCGTTCTAAACACGGGCAGGATGTTTAG
- Protein Sequence
- MELEKLGQQRQVVIKIDNWDSSTGRIKTERIILKKIRKDGRVKVKKESDAKDKETVEDDNDDKKSKKKYEINRSPELTKNRVNLKAILQYSNATPIRCRGDIGYACCFCEDQYPEPAALKKHTIETHDYDTMSMLMKEKRVYSVKLDITGLQCKICFENMQNVEQLTDHLVDSHEKTLFKNIRSYIMPMKFESDVLQCFICSNTFNNYKGLVEHMNTHSRNFICEVCDAGFLNRDILRHHSKIHDLGSYSCDHCTKTFNTYRKKKSHENSVHIRRNMVNKCGFCNEKFNGHYKKIVHLSEVHGIDPTVLNCQACDRTFKNRSALRIHIQRFHLLERPYSCTECELSFYKKFELDKHMVKHTGIKDFQCDVCFKSYGRKSTLREHMRIHKDDRRFKCVHCEMAFVQRCSWRGLRQLHVTVEITEADEDCQELQDLNAELKTSRLDIGHALELVKNRLNFKEIIRCSNATPFRGARANGYACCYCPAIYPNPATLKIHTLVSHDDSTKEKLMKEMKVYSVRLDVTGLECSICYKAMINLEELMDHLIYVHDKVMHKNIKNFLLPFKFEDNELRCALCSIHFVKFKSLLEHMNMHYRNFVCNVCGAGFVYRDILRHHSKSHEMGVFACNFCSKHFDTRRKKKSHESAVHKRANMINKCAICDQKFISYGKKLKHMAQDHGISIPVLECRACDKSFTSQNAYRTHMHRDHLLERNFKCDVCDMGFYESDLLKNHMIKHTKEKTHRCNVCLKSYGRKSTLQMHMRIHADDRRFKCDHCGMGSRHQVELETCSRRTNKKAIRIITINRDREETETKFADTLKRITPMYKQLTNLKEIVLCSNATLIKSKTDFGYECCFCDEKYHEPGDLKEHCLDNHKGIEGAKFMNRPFENSFLAKLDITDLRCNICYSSIDTLEDLMEHLHGKHKRKIFADVKNQMIPFKFDSSNLQCCICFKGFNKFKMLHEHMHTHYRHYTCKECDAGFINRNTLRIHMHTHKLGIFQCQFCAKIFDTYLKKHSHERCVHNDAILLNKCGYCNERFKDSRQKDKHLAEIHGVKLPPAICQTCNRQFGSQNSLKMHMKRDHLLERKFSCTECDKSFFVKTELSRHMVKHTGTREFECVICGKSYGRQTTLREHMRIHANDRRHKCRICGMAFVQKCSWKGHMRSKHGQDV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01359959;
- 90% Identity
- -
- 80% Identity
- -