Clyc009917.1
Basic Information
- Insect
- Cecropterus lyciades
- Gene Symbol
- rfx7.L
- Assembly
- GCA_002930495.1
- Location
- MOOZ01000676.1:1898289-1909551[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-33 5.1e-29 101.3 0.0 3 78 150 225 148 226 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGTACGACTCCGTTTCAGCCTTGGACCGATGAAGATAATACGAAAAATGTTAAAACCGAAAGAGAATTAGTGGATGACGCGAAACTTCATCGGGAAAATGTCAATCATCCAAAACATAGGCAAATTGCGTCTTACGTTAAAGAAAGTATTGTTCCTTCAAATATCTCCCCGGGACCATCGAGTGCTGCGGGCGCAGGCCCCGCGCCAGTTCCGGTCAAGGAGTCTAAGATGGACTCCGGCAAAGTAGCATCTATGCAACAAATAGTCGAAAACGCTCTAAGTCAGGAGGGGCGGCAAAGGGTATCACAATTACTGGAAGCAGTGGAGGCTCTGAGTGGGGCGGAGAGACTCCTTTTGTATCTTCGGCTGCCAACTGGTGTTCCTCCACATGATCCTCTTAAGCAACCTATCAATCCATTAGGATCTAGAGCTGAGCTTCAACAAACAGTAACATGGATTCAAACACATTTAGAAGTAGATCCAGATGTTTCATTGCCAAAGCAGGATGTTTATGATGAATACATCGCTCATTGTATGAGCTGCAACATGAAGGCATTATCGACAGCTGACTTCGGAAAAGTGATGAAGCAAGTGTACCCTAGTGTGCGCCCGCGACGACTCGGCACTCGTGGGAATTCTAGATACTGTTATGCTGGTCTTCGGAAAAAGATTAAATTGGAAGTGCCACAGTTACCTGATTTGGGAGAATCGTCCAAGGAACCAAGTATATCATCGAGAGAAAATGAGCGAATAATATGCGACTGGGCCGAAATTAAATTGGGTATGAAGTTCGCGAGTATATCGGAGCTGTCGCGGCACCTGGCGGGCGTGGCGCGCGCGCCGCCTGTCGCTTCGCCGCCGCCGCTCGCGCCCGTTCACGGGCAACCGGAGGATGCGCCAGGGCGGGAGGTGATGAGGCGGGAGTTGAAGAGAAAAATACAAACACAAGGAACACCCGGTCGGCCGAAACGAAACAAGGGGCAGGAGAGCACCGGAGAGTCGCCACCGTCCACGTCGTACGTACATCCCGTGAAGCACGAGAGCGAGCCGCCCGAAGCGGGCTACGGGTACCAGCCGTACGTGTACGACGCGCGCTCGCCCTACCCCGCCTACGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCGCCGCACGCCGCCATGGTGTGCTTCCCGACACCGCACACAACGTCCCCATCAACCTGAGCAGCAACGCCTCGCTCGATCTCTCCACGGAGCGCACCGAGTGGCCGCGCCGCCGGCCGCCGGACCCGAGCCAGCCGCGGCTGCAGCTGCCCGGCAAGAAGCTGATCCTCGAAACGTACCAGAGCGAGACGCAGGCGAGCTCGCCGCGCTCGTCGCAGACGGACGCCCGGGCGACGCAGGCGGCGCCCGAGGAGTTCCCCCGCACGGAGTACCTGCCGAAGAAGATGCGAGCCGCCGAGAGTCTCGGCGGCAAGCTGGCGGCCACGCGGCAGCAGGCGCCCGCGGCCGAGCCCGCGCCGCCCTCCGCGGAGTCCGCCGTACGTTCTGAGGTTGCTTTTTTAGAGGATTCAAAAAACTTAACGAACCGGTCCAAAAGCACCGCCGCGGCGCTGGCCCGGGAGGAACAGGAGGCGGCGAGTCCGACACGGTCGGTGAAGGCTCTGACGCCTAAGTATGCGACAAAATTTAGCGCGCGAACGAAGGAGGCGCCGGACGGGCCCGCGACTCCCGACTCGTGTTGCGGCCTCGACGGCATCAATATCAAGACGGGCATGATATGCGAGGAGAAGCATTCGGAAATCTTAAACAGGGAACGAGTGATAAGTATCTGTAACATCGACAAACACGACTTGGACGATTATCTGAACGAGGGTAACAGTCAGGAACACGAGGAGGaattattacagtattttcaACAACGAGATAACGATCATGACGTGTCCGGCGATCCGAATTCTACTAGTAGTGCAGCTGCTTTTTTAGAAGCAGGCCAGGACCCTCAAGACGATCATAGCCAGGGTAAAAGCGAAAAGATATCACAATTGAGAGAATTATTAGCGAAGAATTTAAAAAACCAAAGTGGGTCCAATTCAACCAATCTCCCAACAAACCAAGAACAACAAATTACATTAGTAAACCGTGACCAACAAGTAAATAAGACACCGGTCACCGAAGGAGCCTTTAAACCGGTAGTAGACGTTATGAATGGCCCAAATGTAGCTAaccaaaatgaaattaatgttaataagcACTCTAATTCGCTtcctaatgaaaataatgtatcgGTGACATATAACGCAAGTACCGCCGCAAATCCATTGTTGAGTAACGTAGGCGGACCTCACATGTTCAATGGAAATTGCCATAATGAACCACAGAGTCCAACGACGAGAACGCAGCAATACGATTTTGTGCCCATTTCCGATGGATGTCATTCGCCTGGAAATTTCCACTCTAAATCACCATTAGGGTTTGGTCAaagaggccatagtccatcaaAACTGAACAAATCTGTTATATTAGGTGGATCTCTCCAAACTTCTCCAATATCGCATAGTACTGCAGCCAGTCCTTTTGTCAGTCCAAGAAATACTCCAGTACCTCGGTCTCGACTCTGCCCGCGACCTATTCCCAAACATAATGGCAGGAAAAGGCGTAATCCCCTTTCTTTAGGCGTGGGAGATCCATGTTCTAAGCAATTCGCTGTACCAAACGACCAAAAGTTTTTACACAAATCACCAATTAGTGCCACAAGTTTGAAATACTACCAACCGATGTCAGCTCCGCCTTCGCCCAATCTGACGCAGTATAAAAATCCAATGTTACAAAACTCCCCAGGAATACAAAACGGCAATAGTAATATGTGCTTAAATTTCATGCCGAACACTTTATTCAGAGAGCATATGAATGGTGAACTTACACAACCCCTTTCAGCAGATCCGCTATCTAGTGAGGTTAGCAGATTTTTTCAGCAAGAACCTATCGTAAATTTTAGACTTAGTCATGATCCATCGTTCAGATCTCAGTCGGTGCCATTGAAGCAAGGCATGAATACTGTAGGTCTACTGAGCTATAACAATACTCCAGTAGGTTCCGTACCCCCGACCCCAGTACCCAACGAGTTCTGTGACTTTGGGTCTCTAGCTGATACGTGCGACATATCGAAAGCCGGCCTCAATCCGGAAACTTTGGATAAAATTTATGACGCAATAGATAGTAGTAATGACGTACTTAATACGGGTGCACCaccaaatttattaaattctaatgatacCCTCACCAATGGTTGTGATCCCCTGCCCGAACAGCAGATCCTAACTGAAGAACAATTGAGTTCGTATATTCCAAACAGCGGCGATTTGCTCGACCGTAATAGTCAGTACAATCAATCATTCCCCGGCGACGCCGCCACTACTGATAACGTGGAAGAATTTTTAAAGCGGGCGAACAGTATAGAGTTCGATTTGTCTGACTTGGTTTCGGACAAAAACAAGTATTACACGTCGAGGTCAGTTCCGAGCACGCCGCTGCCTTATAAAAGAACGGCGGCGAACTTACAAATCGACTCGAGACGATCTCGAGAGCTATTTGCAGCTGATAGTTACTCCACCGTCTCTAATGGGATATCGTCTAAATCGGTGCCGTCTACTCCGCAACTCGCCGAAGACCGTAGTGTCTTCAGTTATAGTAACAGAGACTTTCTAATTAATGGAAACTCGGTGGAAATATGTGGTTCTACTCAAATTCGTACAGTCGTTGAAAACGATCAAGGATTGACCTCGCCGCTCGACATCTTACGTGAGGACATATTGGACCCGTTGACTCCTGCGGCTGACCTTCTAGCTGATCTTGACAAAATTGACGGAGCGCCATACGTTGACCTCTAG
- Protein Sequence
- MESTTPFQPWTDEDNTKNVKTERELVDDAKLHRENVNHPKHRQIASYVKESIVPSNISPGPSSAAGAGPAPVPVKESKMDSGKVASMQQIVENALSQEGRQRVSQLLEAVEALSGAERLLLYLRLPTGVPPHDPLKQPINPLGSRAELQQTVTWIQTHLEVDPDVSLPKQDVYDEYIAHCMSCNMKALSTADFGKVMKQVYPSVRPRRLGTRGNSRYCYAGLRKKIKLEVPQLPDLGESSKEPSISSRENERIICDWAEIKLGMKFASISELSRHLAGVARAPPVASPPPLAPVHGQPEDAPGREVMRRELKRKIQTQGTPGRPKRNKGQESTGESPPSTSYVHPVKHESEPPEAGYGYQPYVYDARSPYPAYAXXXXXXXXXXXXXXAPAARRHGVLPDTAHNVPINLSSNASLDLSTERTEWPRRRPPDPSQPRLQLPGKKLILETYQSETQASSPRSSQTDARATQAAPEEFPRTEYLPKKMRAAESLGGKLAATRQQAPAAEPAPPSAESAVRSEVAFLEDSKNLTNRSKSTAAALAREEQEAASPTRSVKALTPKYATKFSARTKEAPDGPATPDSCCGLDGINIKTGMICEEKHSEILNRERVISICNIDKHDLDDYLNEGNSQEHEEELLQYFQQRDNDHDVSGDPNSTSSAAAFLEAGQDPQDDHSQGKSEKISQLRELLAKNLKNQSGSNSTNLPTNQEQQITLVNRDQQVNKTPVTEGAFKPVVDVMNGPNVANQNEINVNKHSNSLPNENNVSVTYNASTAANPLLSNVGGPHMFNGNCHNEPQSPTTRTQQYDFVPISDGCHSPGNFHSKSPLGFGQRGHSPSKLNKSVILGGSLQTSPISHSTAASPFVSPRNTPVPRSRLCPRPIPKHNGRKRRNPLSLGVGDPCSKQFAVPNDQKFLHKSPISATSLKYYQPMSAPPSPNLTQYKNPMLQNSPGIQNGNSNMCLNFMPNTLFREHMNGELTQPLSADPLSSEVSRFFQQEPIVNFRLSHDPSFRSQSVPLKQGMNTVGLLSYNNTPVGSVPPTPVPNEFCDFGSLADTCDISKAGLNPETLDKIYDAIDSSNDVLNTGAPPNLLNSNDTLTNGCDPLPEQQILTEEQLSSYIPNSGDLLDRNSQYNQSFPGDAATTDNVEEFLKRANSIEFDLSDLVSDKNKYYTSRSVPSTPLPYKRTAANLQIDSRRSRELFAADSYSTVSNGISSKSVPSTPQLAEDRSVFSYSNRDFLINGNSVEICGSTQIRTVVENDQGLTSPLDILREDILDPLTPAADLLADLDKIDGAPYVDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01359457; iTF_00970146; iTF_00970971; iTF_01437700; iTF_01438631; iTF_01082156; iTF_00795436; iTF_00673232; iTF_00025016; iTF_00277119;
- 90% Identity
- iTF_01359457;
- 80% Identity
- -