Csem022145.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- nfxl1
- Assembly
- GCA_900474235.1
- Location
- UCQR01072522.1:4543-5402[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.89 5.8e+03 -2.0 1.2 15 19 126 130 125 130 0.86 2 4 0.047 3.1e+02 2.1 0.1 4 10 161 167 160 168 0.95 3 4 4.9e-09 3.2e-05 24.4 16.7 1 19 175 192 175 192 0.99 4 4 3.1 2e+04 -3.8 2.5 17 19 206 208 201 211 0.57
Sequence Information
- Coding Sequence
- ATGAGGAAATTTAGAAGAGCTCAGGCACAAAATCAAGCTTCTATTGAAAAACATTTGGAGGCACAGAAATCTAGGAGTGTGGAATCTTCTAGTAGTGAGGATGAAAATGAACAAGTGTTGGAAACAGCTGTCGAAAAAGTTTTATCCAACTATCAATCTGAAGGTGGTGATGTTAAGAAAACATTGTCGTATTTAACTGAAACTTTTCAGTCTGGAGGCGCTGTTTGCTTGATATGTATATCATCTGTTAAAAAAACAGATGCGaTATGGAGCTGTGCAGaatgttttacttttatgCATTTACCTTGTATTCAACATTGGGTCAGGGATAGTTTGAGTTCTAAACATGAGAAAGGAATTGTACCCTTATGGGGATGCCCTAAATGCAGAAAAGAATATAGAGAAGATCAAATACCAAAACGATATGTGTGCTTTTGTGGCAAAACTGAAGATCCACCATATCAACCATGGTCAATTCCTCATTCTTGTGCAGACATATGTGGAAAGTTTCTTCTACCAAAATGTGGACACAAATGCATGCTTCTGTGTCACCCTGGTCCATGTCCTCCGTGTCCAAAAATGGTGTCAGTTACCTGTTTCTGTGGAAAACAATCACCTTGCCCACGGAGATGTAATGCAAAGGAGTGGTCTTGTGGA
- Protein Sequence
- MRKFRRAQAQNQASIEKHLEAQKSRSVESSSSEDENEQVLETAVEKVLSNYQSEGGDVKKTLSYLTETFQSGGAVCLICISSVKKTDAIWSCAECFTFMHLPCIQHWVRDSLSSKHEKGIVPLWGCPKCRKEYREDQIPKRYVCFCGKTEDPPYQPWSIPHSCADICGKFLLPKCGHKCMLLCHPGPCPPCPKMVSVTCFCGKQSPCPRRCNAKEWSCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00287746;
- 90% Identity
- iTF_00287746;
- 80% Identity
- iTF_00287746;