Csem008131.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cecidostiba semifascia
Gene Symbol
zfh1
Assembly
GCA_900474235.1
Location
UCQR01088092.1:6320-11143[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.068 6.8 7.9 0.7 2 23 70 92 70 92 0.90
2 7 3.1e-05 0.0031 18.4 0.6 2 23 111 132 110 132 0.97
3 7 7.3e-06 0.00073 20.4 7.8 1 23 141 163 141 163 0.99
4 7 0.00022 0.022 15.7 2.6 1 21 169 189 169 190 0.95
5 7 0.00011 0.011 16.7 4.7 1 23 735 757 735 757 0.94
6 7 2.6e-05 0.0026 18.7 8.1 1 23 763 785 763 785 0.98
7 7 0.0019 0.19 12.7 4.3 1 21 791 811 791 812 0.96

Sequence Information

Coding Sequence
ATGGACCTTGTGGTGTCAGATGTAGAATTTTCTCGGTGCAGCGAGGACGAAGCAGGTGCCGACGCCGAGGTGGGCGGTTGCGCGGACAATGCTGTCGTATCCAATGGCATgaagcatcatcagcagccAGTCGAGGGCGTCTCCgaagaaagcagcagcaacaatacCAGCAGCAGTGATATAATCGGAGCTGGCAACAAGAGCGAACGGTGTCCCCAGTGTGGCATCGTCTGCCGCAATTCCCGCATACTTCAGCTTCATCTCGAGGACCAGCACAAGCCCCTCGGCGCTGCTTACGCCATCGACAAGCACGACCTTCAGGCCCAAGTTTCGTGCAAGGTATGCAGCAAAACTTTCGCCAACGTGTACAGACTACAAAGGCACATGATCAGCCACGACGAGAGCGCGGTGCTCCGCAAATTCAAGTGTCCTCACTGTGAGAAGGCCTTCAAATTCAAACATCATCTCAAGGAGCACTTGAGAATACACAGCGGGGAGAAGCCCTTCCAATGCAACAACTGCAGCAAGCGGTTCTCCCACTCGGGCTCCTACTCGTCCCACATGACGTCGAAGAAGTGCCTCGTGGTCAATCTCAAGAAGTCGAGGCAGAGTTCCATCGGTGCGACGGCCAACGCCGATCGCAGTTCTACCGGAAAGAAGTCtcagccacagcagcagcagcagcaacaacagcaacagcaacagcaacagcagcatcagccgacGCTGCAGGTAAGACGCGAGGCTGAGCTGCTCGCGGCAAACAACAATACCTTCCTGCCTATTCTGCCTAAGATGTCGCCCTCGGATTATCGGGATATCCAGCGAGACACAGCGGGTCTTTACGATATGCCAACCCTGCTGCCTCACATGGTCGGTTTCGGCAACTACTTCCTCCAGTCGTCGCTCGGTAAAATCCTCAGCCAGCTGCACGCCAAGCAGcaggaacagcagcagcatcaccaTCAGCCGCAGCAACAGTCACACCACAACAATCATCTCCAGAATAGTCATCACCGTCTGGACGAATCGGGCAGCGAACACTACGACGCCCTGAGCCAGCAGAGCGAAGCAGCCCTCAGTCCCTCGACGACAGCCCCCGATTCCGAGGGCACGACTACCGAGGGTACCGAAGGTGGCAAAGAGTCACCGGCCCCGCCGCCACCGGCTCTACATCACCTGCCGCATCCTGAGCAGTCTCAGGGCCTCGATGCCGTGAGAAGACTGCTGGAGACGGTCAACACCTCGGTCACGAAACAGCTGCTCGAGGCCAATGTGAAGAAGCTCGCGTCCTCGATCGCCATGGTCATCAAGCGCGACATGGACGAGGACTATCCGGATCAGGATAGCGAGATGTCGACCGAAGTGCCGCACTACCAGGATGAGTGGTCCGCGACGGAACAGTGTGACTCACAGAGCGAGGGTCTGGCCGCGAAACTTGAGGAGGTACATCAGAAACCCGTACCGGCGGCAGTTCCAATCGTACCGCAGCGCCAGTCTCTGAAACGTAAGGCAGAGAACGGCTTGTCGACGCACACCTCTGAAGCCGACAGCGAGGATGACGAGGATCATTTGCTGCAACAGCACCAACAAGACAGTCAGGGCAACGGCGCTGGCCGCAGGGTTAGGGCGAGGTCGCTCATCGACGACGAGCAGCTTGCCGTACTCAGGAGCTACTACGCTGTTAACCCGAGGCCGAAAAAGGAGGAGATCACGATGATCGCTAACTACATCAACTTTTCTACGCGCGTTGTACAGGTCTGGTTCCAAAATTCCCGAGCGAGAGACCGTCGCGAAGCCAAGATACCGGCACTGGTGCCGCTCTCGAGTTTGAACCACCACGTATTTAACGACCAGCCGCTCGACCTCTCGAAAAAAGATGTCCTCAGGACAATATCGACGGCGAAGGACAGCAGCGACGCCTCGAGTAGGCACACCGCCTCGCCCTGCGGTCCCAAGGAGGACGCGCTTGTGCCGAAAGTGCTCGCCAACAACAACATCGAGCCTGAGGACGCGGACGAATCGCCCCTCGTTATCGACGAAGAAACCACCGACCCTGCCGAGGTCAAGCAGCCGCCGGCTAGCATGCCTGTCGAGGTCATCATCAAGGCTCAATCTCCGATTATGCAAATTAAGAATGACGTCGAGGCGAGGGTGAATGTGGATCCTGTACCGCAAACAGAGACGGAACAAGAAGGACTGTACTTCTGCAACCAGTGCGATAAGACTTTCTCCAAGCATAGCTCTCTAGCTAGACATAAATATGAACATTCCGGGCAAAGGCCGTACAAGTGTCAGGAGTGCCCGAAAGCATTTAAGCACAAGCATCACCTGACGGAACACAAGCGACTGCACAGCGGCGAGAAGCCCTTCCAGTGCTCCAAGTGCCTCAAGCGCTTCTCTCACTCCGGCTCCTACAGCCAACATATGAACCATCGTTACTCATACTGCAAGCCTTACAGAGAATAG
Protein Sequence
MDLVVSDVEFSRCSEDEAGADAEVGGCADNAVVSNGMKHHQQPVEGVSEESSSNNTSSSDIIGAGNKSERCPQCGIVCRNSRILQLHLEDQHKPLGAAYAIDKHDLQAQVSCKVCSKTFANVYRLQRHMISHDESAVLRKFKCPHCEKAFKFKHHLKEHLRIHSGEKPFQCNNCSKRFSHSGSYSSHMTSKKCLVVNLKKSRQSSIGATANADRSSTGKKSQPQQQQQQQQQQQQQQQHQPTLQVRREAELLAANNNTFLPILPKMSPSDYRDIQRDTAGLYDMPTLLPHMVGFGNYFLQSSLGKILSQLHAKQQEQQQHHHQPQQQSHHNNHLQNSHHRLDESGSEHYDALSQQSEAALSPSTTAPDSEGTTTEGTEGGKESPAPPPPALHHLPHPEQSQGLDAVRRLLETVNTSVTKQLLEANVKKLASSIAMVIKRDMDEDYPDQDSEMSTEVPHYQDEWSATEQCDSQSEGLAAKLEEVHQKPVPAAVPIVPQRQSLKRKAENGLSTHTSEADSEDDEDHLLQQHQQDSQGNGAGRRVRARSLIDDEQLAVLRSYYAVNPRPKKEEITMIANYINFSTRVVQVWFQNSRARDRREAKIPALVPLSSLNHHVFNDQPLDLSKKDVLRTISTAKDSSDASSRHTASPCGPKEDALVPKVLANNNIEPEDADESPLVIDEETTDPAEVKQPPASMPVEVIIKAQSPIMQIKNDVEARVNVDPVPQTETEQEGLYFCNQCDKTFSKHSSLARHKYEHSGQRPYKCQECPKAFKHKHHLTEHKRLHSGEKPFQCSKCLKRFSHSGSYSQHMNHRYSYCKPYRE