Csem002792.1
Basic Information
- Insect
- Cecidostiba semifascia
- Gene Symbol
- ZNF462
- Assembly
- GCA_900474235.1
- Location
- UCQR01087067.1:26811-29632[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.7e-06 0.00047 21.0 1.5 2 23 45 66 45 66 0.97 2 18 0.0094 0.95 10.6 3.0 1 23 72 95 72 95 0.96 3 18 0.25 25 6.1 0.3 1 23 102 125 102 125 0.92 4 18 0.0023 0.24 12.5 0.3 1 23 131 154 131 154 0.97 5 18 0.0003 0.031 15.3 0.1 2 23 160 182 159 182 0.94 6 18 0.00053 0.054 14.5 0.5 1 23 189 211 189 211 0.98 7 18 0.0001 0.01 16.8 7.4 1 23 215 237 215 237 0.97 8 18 0.0011 0.11 13.5 0.0 1 23 243 265 243 265 0.98 9 18 4.5e-06 0.00045 21.0 0.8 1 23 271 294 271 294 0.98 10 18 0.29 29 5.9 2.4 1 23 532 555 532 555 0.91 11 18 1.5e-06 0.00015 22.5 3.7 1 23 561 583 561 583 0.99 12 18 0.39 39 5.5 5.9 1 23 591 614 591 614 0.95 13 18 0.0088 0.88 10.7 6.7 1 20 620 639 620 642 0.96 14 18 0.00017 0.017 16.1 0.6 1 23 647 669 647 669 0.98 15 18 0.00015 0.015 16.3 0.2 1 23 675 697 675 697 0.97 16 18 0.00017 0.017 16.1 1.5 1 23 701 723 701 723 0.98 17 18 0.00026 0.026 15.5 0.0 1 23 729 751 729 751 0.95 18 18 0.00065 0.065 14.2 0.4 1 23 757 780 757 780 0.98
Sequence Information
- Coding Sequence
- ATGAGCTTTGAACGGATGGAAGATCTTTACCCACAGTTATTAAATGATATTGATATAGACCTTTTCAACGATGAAGTCGAACAGTCTTCCAATTCTTCCTTAGAGCCCATCGAGTACGACCCAAATGGCCCGACCTGTTACCTTTGTGATAAAGTCTTCCGTCGAAACAAACAGCTGCGCCTGCATATGAGCATACACCAGACCACCAAACCTTACCAGTGCAATCTTTGCTCGACAACTTTCAAGACCATCGAGTACCACAATAGACACATGAATCTCATCCACGGCAACTCGAAGAAGCCGTATCCCTGCGACAAGTGCGATTACCAGGCTAACTCGAAGATCAGACTCCGAGACCACGTGGCCTATAAACACTCGAATGTCTTCAAATTTCCCTGCCAGCTGTGCGATAAAAAGTTCAAGGTAGACTGGGTACTGAGGATGCACGTGCGAAAGTGGCATCAGAGCGGGCCCAGCTCCTGCAACGTTTGCGGCAAGGCCTACCCCAACGAAGGCGCCCTGTTCAATCACCAAGTCAAGAAGCACAAAAAAAACGACAAGAGCTTCCCGTGTACTGTCTGCAAGCAAAGCTTGGCCAGTCAGAAAAGTTTGGATACGCACATGAAGCTTCACAAGACGAAGCACTCCTGCGAGCACTGCGGTAAAATCTGCAAGTCGCAGAACAACCTGAAGAATCATCTAACGACGCACAACGACGAGAAAAATTATGCCTGCCCGATCTGCGACAGCGAGTTTACTCTGAAAGGGGCACAGCAGGTTCATATGCTGACGCATCTAAAAGAGAAGCCCTACGTTTGTGATATATGCGGTAAAAAATTCACGCAGAGATCGCCGATGATGCTGCACAGAAGAAAACTTCATCCGGACGTGAATCAACCGCCTCCGccgaaaatcaaaattaccgAGCTGGCAGGAACAATCTGCTGGCAAGGACTAGACAACCAGCTAATAATCATCAGTGTGAAAAACGAATTCGATACTCGACCAGAGGTAGAACAAGTTTCTACGCAACAACGAGTCGTACTATCCCAGCAGCGACAACCGCTCATAGTCTTACAACAACAGGGACAACAGTCTCAGCAGccgattattttatttcaacaacCGCACGAAGAGCAGCCATTAGTGCTGCTACAGCAACCTGAAAAGCATGACATGCAGCAAGAAAAAGGACCGACGGAGCAGAAGCTTTCTTTGCAAGCTCCGCAGCAGGAAGAAATTCTgcttgaatttgaaaattctgaaGATTCACTGTCACAGATTTCAGAGGTTGCTGCCGCTGCTCCTACcgtaaaaacaattataaggAGAATTCGTAATCCCAAGCCTACAGCGCCCAAAACACGGAGATCATCGAACGTCAAAAAATCGATATCAAAGGTATCAACAGAAGTAGTAAACGAGCGGCAAACACCAATCTCGCAAGAAACTGCGCAACCGTCTACTTCTCAAGAACCTTTCACGCAACTCGAAAATGACCCcttagacgacgacgacgacgacgacgacgacgacgacgtgaaAGATTCCGATCTGAGCGAGGACATTTTTGTACGCATGGACGACGGCGGATACCGTTGTAACGTCTGCCAGAAAACCAAGCACAACCGTCGCAACATGCTTAGACACGTCATTGGTCAGCACTCACAGATACGGCCGTTCAAGTGCAATCAGTGCGACAAGCGCTTCAAGCGCAAATACACCCTGGGCATCCACCAACGCTCACACCAACTCAAACAGTCAGATGGATACAAGTGCGAGAAGTGCAATTACCACACACCGTTGAAGTCCTCGTTGTATCTTCACCACTATCGCATGCATACCAACGAGTATCGCTTCACCTGCGAACACTGCGGTAAGCGCTGCAAGTTCAAGCGCGAGCTTGTCGACCACATGGTCTGCCACAGCGACGAGCGCTACATGTGCGACATTTGTGGTAAGCTCTACAAAGGCGTGCATCTTCTCAGAGCGCATAGGAGAATCCACCTCGACCCTTACAAGTTTCCCTGCGCACTGTGCAAGAAGAAGCTCGCCACGGCGGAGAGCTTGCAGAACCACATGAAGCTCCACAACCGAACGTTCGAGTGCGACGAGTGCGGCATGAAGTTCTCCTGTAAGCCTAATCTCATTAAGCACAGGAACGTACACACGAGGGAGCATGCTTTCGCCTGTCCCGAGTGTGGCAAGATCTTCGCTGATCAGGCGACGCAAAAAGTGCACTCGCTTATTCACGCCGGTCTGAGACCGTACAGGTGCAACGTGTGCGGAGTGGGATTCACGCAGAGGACACCGATGATGCTACACTGGAGGAAAAAACATCCTGGCGAGACCGAGATACCACCTCCGGTTATTCTGAAGAATATACTGAAGAGCATCGAGGAGCAGAATGGAAAGAAGGCAAAGCTGGCGAACAAGGAGTGA
- Protein Sequence
- MSFERMEDLYPQLLNDIDIDLFNDEVEQSSNSSLEPIEYDPNGPTCYLCDKVFRRNKQLRLHMSIHQTTKPYQCNLCSTTFKTIEYHNRHMNLIHGNSKKPYPCDKCDYQANSKIRLRDHVAYKHSNVFKFPCQLCDKKFKVDWVLRMHVRKWHQSGPSSCNVCGKAYPNEGALFNHQVKKHKKNDKSFPCTVCKQSLASQKSLDTHMKLHKTKHSCEHCGKICKSQNNLKNHLTTHNDEKNYACPICDSEFTLKGAQQVHMLTHLKEKPYVCDICGKKFTQRSPMMLHRRKLHPDVNQPPPPKIKITELAGTICWQGLDNQLIIISVKNEFDTRPEVEQVSTQQRVVLSQQRQPLIVLQQQGQQSQQPIILFQQPHEEQPLVLLQQPEKHDMQQEKGPTEQKLSLQAPQQEEILLEFENSEDSLSQISEVAAAAPTVKTIIRRIRNPKPTAPKTRRSSNVKKSISKVSTEVVNERQTPISQETAQPSTSQEPFTQLENDPLDDDDDDDDDDDVKDSDLSEDIFVRMDDGGYRCNVCQKTKHNRRNMLRHVIGQHSQIRPFKCNQCDKRFKRKYTLGIHQRSHQLKQSDGYKCEKCNYHTPLKSSLYLHHYRMHTNEYRFTCEHCGKRCKFKRELVDHMVCHSDERYMCDICGKLYKGVHLLRAHRRIHLDPYKFPCALCKKKLATAESLQNHMKLHNRTFECDECGMKFSCKPNLIKHRNVHTREHAFACPECGKIFADQATQKVHSLIHAGLRPYRCNVCGVGFTQRTPMMLHWRKKHPGETEIPPPVILKNILKSIEEQNGKKAKLANKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286644;
- 90% Identity
- -
- 80% Identity
- -