Csub017915.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- lola_12
- Assembly
- GCA_011634745.1
- Location
- JAABKK010000767.1:1644479-1648252[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.27 1.5e+03 0.0 0.0 26 44 47 65 40 68 0.83 2 3 1.6e-08 9.3e-05 23.1 0.6 25 45 72 92 66 96 0.90 3 3 0.0074 42 5.0 0.1 22 48 261 287 256 290 0.88
Sequence Information
- Coding Sequence
- atggtGCTGGGTTCTAAATTAGTtagacaatttaataaaacttctattattgtaatttacaaaatcaaagAGGATACATGGATTACAGCTGGATTGGAaccacatattatatatatggatGATGGGCAACCACGTTTTGTTTGTCCAAGATGTGgcgttaaatataaaaaagtcaGTGGATTACGGGGCCATTTGAAAGAATGTGGCACTGGTGCCCAATGTCCCATATGTCCGAAAGTAGTGACACAACGACGGAATTTACGTAAACACATGGAAAAACATCGACGCGAAGgaatattaaatcataaaaataatgatgatgataagtcaattttgaaaacatgGAAATTTTTCGCttcggctttttgtatttcagagcgtaatataacaaattGTTCATCAACGATTTCATACAATGAACGAATATTACCAGTGACAATAATTAGCAATGTTACCGATATCGCTAATTCATCACTGATGAATAGCAGTTGCACTACAACCGCATCAACAACAGATTTATCAACAGATACGAGCAGCGGCGGCTATTTTATATGTGAccaatgcaataaaaaatatcgtgTTCGTGGTTCATTACAAcgtcataaaaaatatgaatgtgATCTTTGGGGTGATTATATTTACTTAGCACAATACACAGACGATGCCTACAATCCAAAGTTTCAACGACGAAATGGACAAAATTTTCCATGTGGTAAATGCTCTAAATGGTACTCAACAAGATCAATTATGCTGCGTCATATGAATCACGAATGTGGAATGGAAAAGAAGATCGTTTGCAATCTGTGTCAGAAGAAGTTTAGACGTAAATGGAATTTAGAACAACACTTGAAAAGAGTTCATTTGATTGGCGATTag
- Protein Sequence
- MVLGSKLVRQFNKTSIIVIYKIKEDTWITAGLEPHIIYMDDGQPRFVCPRCGVKYKKVSGLRGHLKECGTGAQCPICPKVVTQRRNLRKHMEKHRREGILNHKNNDDDKSILKTWKFFASAFCISERNITNCSSTISYNERILPVTIISNVTDIANSSLMNSSCTTTASTTDLSTDTSSGGYFICDQCNKKYRVRGSLQRHKKYECDLWGDYIYLAQYTDDAYNPKFQRRNGQNFPCGKCSKWYSTRSIMLRHMNHECGMEKKIVCNLCQKKFRRKWNLEQHLKRVHLIGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00285830;
- 90% Identity
- iTF_00285830;
- 80% Identity
- iTF_00285830;