Csub015139.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- Zfy2_2
- Assembly
- GCA_011634745.1
- Location
- JAABKK010002452.1:1000-2951[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.4e-05 0.3 11.9 0.0 12 48 180 216 177 221 0.83 2 5 0.08 4.5e+02 1.7 0.0 21 44 217 240 214 245 0.89 3 5 0.009 51 4.7 0.0 26 47 301 322 289 327 0.82 4 5 0.018 1e+02 3.8 0.0 21 43 324 346 322 351 0.89 5 5 5e-05 0.28 12.0 0.2 26 45 406 425 398 433 0.86
Sequence Information
- Coding Sequence
- atggattttttttccaaacatgGCACTGTTGATATAATACCGCTAAATCATGGAgtcaaaatcaaaactgaACCAGAGTTAAtgttgaatgaaaatgaagagaaTGTTATCTctgattatgatgataatgaggATGATGGCGAAAACATTAGTGATGAAGACAATATAGATCATCATcacaattacaataataattcgtccgttgaaattattaaagcgaaaaataatcgaaattttCATACAACTGAAAATAGTTTTACACCGGAAACCATTGAAGTTGAACCAGAATTAATTCTTGGTGATGAAGATGAAAGTCAATTTGATATTCTTAATCAAGTTGATGAACCGGAAGAATTTGATGAATATGgCTATGAGGTCGGCTGGAATCAACCACAAGTAGTAATGTCGGATAGTTTTTCATACGATGAATCTGAAAGTACTTACAATTCTTATGATAAAACGAAAAACGACGAAAACGctgatgaagatgatgatgatgatgtgatTCTTATTGAAAGCGATGACGGAGACTATGACACAGAGGAAAATAGAGAAGAAGCTGCTGATAAAAAACATTACGAATGTGATATATGTTTTCGTAAGGTGGCGAGCAGTTATAATTTAAAGCGGCACATGATGATAcacaCCGGAGAGAAACCTTACGGTTGCGATATGTGTTTAAAGAGATTCAGGGAATTTTCGGACTTAAAAAAGCATCGGCGTGTTCATAGCTCcgaaacaaaattcaaatgtatGGTTTGCCGACGAAATCCGCCGTCAGCTACAAATGCAACAAAATGCTCAACATGTGAACACAAGGAAGCCACAAGAAAATCTCAGGAGCAAGCATCGATTCGTGAACAGGAATTGCCTCGCTTCGATGGCAACAAGAGAGCATTTGTTTGTAGTTACTGTGATCGAATATTCGGCAGtagttcaaatttaaaacgaCACATAATGATTCACACGGGTGAAAAGCCGTTCTCATGCGAAATTTGTATGCGATCTTTTCGCGAATTAAGCACATTAAAGAAACATTCAATCACTCATCGTACTCCATTACTAACAGCcaccaaatttttgaaatgtttcgtCTGTTCGAAAACATTTACCAATCCAATCAGTTTCAATCAACATTTACGtacacataataattttcaaaataaattaaatgaaataactaTAACACCGGCATCGAATACAATTTACCATCATAAATGTCCTGTTTGCTATAAAGTATTTCGGAATTCGTCTAGCTTAACATTGCATATTTGTAGTGTACATAAAAAGGAACGTGGCCCACCAGTACCTCGACCAGCAccacaaacaaaatatcaagAATCATCATCATTGTCACAAGCACAGCCGATGTGGAGTTTGCGAActacacaatatttttgtgaattttgtgaaaaatactTTCGTTCACAGCAACATTTGCATAGTCATCAATTAACTCACagtaattga
- Protein Sequence
- MDFFSKHGTVDIIPLNHGVKIKTEPELMLNENEENVISDYDDNEDDGENISDEDNIDHHHNYNNNSSVEIIKAKNNRNFHTTENSFTPETIEVEPELILGDEDESQFDILNQVDEPEEFDEYGYEVGWNQPQVVMSDSFSYDESESTYNSYDKTKNDENADEDDDDDVILIESDDGDYDTEENREEAADKKHYECDICFRKVASSYNLKRHMMIHTGEKPYGCDMCLKRFREFSDLKKHRRVHSSETKFKCMVCRRNPPSATNATKCSTCEHKEATRKSQEQASIREQELPRFDGNKRAFVCSYCDRIFGSSSNLKRHIMIHTGEKPFSCEICMRSFRELSTLKKHSITHRTPLLTATKFLKCFVCSKTFTNPISFNQHLRTHNNFQNKLNEITITPASNTIYHHKCPVCYKVFRNSSSLTLHICSVHKKERGPPVPRPAPQTKYQESSSLSQAQPMWSLRTTQYFCEFCEKYFRSQQHLHSHQLTHSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00285734;
- 90% Identity
- iTF_00285734;
- 80% Identity
- iTF_00285734;