Csub021013.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- Aef1
- Assembly
- GCA_011634745.1
- Location
- JAABKK010001626.1:2435-3196[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00067 3.8 8.3 0.0 21 48 15 42 10 46 0.86 2 4 9.5e-05 0.54 11.1 0.0 21 47 43 69 41 74 0.86 3 4 0.0065 36 5.2 0.0 21 45 71 95 68 98 0.88 4 4 7.3e-05 0.41 11.4 0.1 21 48 99 126 97 131 0.87
Sequence Information
- Coding Sequence
- ATGTCGAGAGCCCTAAGTCGTACAATTACAATGACCGTCAGTGGTGAAAAGCCATTTCAATGTGCAATATGCGAGAAGCAATTCCGCCAGCTGAGCACACTGaccaatcattttaaaattcacacCGGAGAAAAACCATTCAAATGTGCTatttgtGACAAAAAGTTTCGTCAATCCAGTACGTTAACGAATCATGCTAAAATACACACAGGGGAAAAACCATTTAGCTGCTCATATtGTAATAAATTGTTTCGTCAGTTGAGCACATTAACAAATCATACCAAAATTCACACGGGTGAAAAGCCTTTTGAATGCGCCGTTTGCAAAAAGCAATTTAGGCAATCAAGTACACTTAacaatcatattaaaatcCATGTGGGCGATAAACCATTTTTACAAGAAATTCAAGACTTACATCATCATTTGAAAGAGGAAACATCGACCGAATCGACAACATGA
- Protein Sequence
- MSRALSRTITMTVSGEKPFQCAICEKQFRQLSTLTNHFKIHTGEKPFKCAICDKKFRQSSTLTNHAKIHTGEKPFSCSYCNKLFRQLSTLTNHTKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVGDKPFLQEIQDLHHHLKEETSTESTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351110;
- 90% Identity
- iTF_00285801;
- 80% Identity
- iTF_00285801;