Csub004559.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- lrrfip2_2
- Assembly
- GCA_011634745.1
- Location
- JAABKK010001844.1:12983-15050[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2 2.8e+04 -7.0 9.5 46 126 37 122 14 191 0.47 2 2 6.5e-31 9.2e-27 94.7 17.1 1 93 234 327 234 327 0.85
Sequence Information
- Coding Sequence
- ATGATGGAGTCACCATCTACAATGAATGAATCATTGGTATTAACGAAGAacgatgaaaatgaaaatgagagCATCGactcaaatcaaaataattcaaatgtttgTAATAGCAAAAGTGTTAAGAAAAGTGccattaaatcaattgaaatagTTGATGGATTAAGTGAAAATGACAGCGTTGGTGGTAATGAAGCTGATATCGAAAATGTTGAAGAAGAATTTGATTTCAGTTCCAGTGATTTCGATGAATCAGATACAGAACATTGTGAAGATAAGAATGATTGCCATAATcctgtattaataaataaaactgttaaTACCGATAAAGGTGAACTTGCTATCGAAGTTGAACAGAAAAAAGATATTcctttaattgaaaatattgatgtacTGAAAAACGATGAAGATTGCAAATCGGAAAGTTCTTCTGAATCGAATCATTTACTTACTTCTACGCCACTGAAATTTCGAACATCTTCGGATGATATTAGTACAGTTGAAGATTCCTTAAACGAGACTACAAATTCATCGcttgttgaaaaatatgaaaaaaattacacaactGACGATGCTACCGATTcatgtatacaaaatataccaGTAACTCCATCTATCAATAATGATACTTCGAAAGAAGATACGTTGGTCAGCGAAGAAGATGAtgccatttttcattttcttggAAAGGCTAATGAAATCGCTGAAGCTCGTTTGGCGCAAAGACGACAGGCTAGAGCTGAGGCACGTGAAATACGTATGCGTGAACTTGAACGTCAGCAAAAGGAACAAGAACAAAATGCAGATAGAGCATTTGACATGCAAGCAGCAGCTGGAATCGATCCAGTAGCACGAACACGTCTAGCGATGTCATCGACAACCATTGGTTCATTGCGTAGTGCAACAATGTCTTCGCGGCGTAGTAGCGAGGATTCATTGGAGGAGGAAGGACGTAGTCTTCGTGATATTAGACATGAACTTAAG
- Protein Sequence
- MMESPSTMNESLVLTKNDENENESIDSNQNNSNVCNSKSVKKSAIKSIEIVDGLSENDSVGGNEADIENVEEEFDFSSSDFDESDTEHCEDKNDCHNPVLINKTVNTDKGELAIEVEQKKDIPLIENIDVLKNDEDCKSESSSESNHLLTSTPLKFRTSSDDISTVEDSLNETTNSSLVEKYEKNYTTDDATDSCIQNIPVTPSINNDTSKEDTLVSEEDDAIFHFLGKANEIAEARLAQRRQARAEAREIRMRELERQQKEQEQNADRAFDMQAAAGIDPVARTRLAMSSTTIGSLRSATMSSRRSSEDSLEEEGRSLRDIRHELK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -