Csub020706.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- lola_2
- Assembly
- GCA_011634745.1
- Location
- JAABKK010000767.1:42969530-42971672[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.81 1.8e+03 -0.6 0.0 1 14 231 244 231 253 0.83 2 3 1.6e-11 3.4e-08 33.7 0.0 3 45 381 423 379 423 0.92 3 3 0.036 79 3.7 1.1 4 20 521 536 520 536 0.93
Sequence Information
- Coding Sequence
- ATGGGTGGTAGCGAAGGTCAAACATATTGTTTGCGATGGAACAATCACAAATCGAATTTAGTTGAAATTTTAGCAACACTCTTTCATAAAGAGTATAACGTTGACTGTACATGTACAATATATGTAGATGAACAAGTTCAATTTAAAGCACATCGCGTTGTTTTAGCAGCTAATTCACCATATTTCCAATCAATTTTACAAGATGTTCCAATGGATCATTGCAGTATATTATTCCCGGGAGTTCAGCCATTTGAAATGCGAGCTCTACTGGAGTATATGTATACCGGTGAAGTGAATGTTACTCAATCACAAATACCACGAATTATGCAAATTGCTGAGCAATTGGAAGTGAAGGGGTTGTTTGATATGACCGACTTGAAAgacaaatttgataaaattaaaatggacgATACACCAAATTATTCACctaatattcaaaatgcacaatcgaataataataaagtacaaAACAATCAACAATCATCACCGATCATTTCAACATCAACAAATATATCATCATCAGCTCAAAGCAGCAGTTCGTCACCACCATATAATTACAAATCGCATTATTcaagtatattttcacgaagTCCAGTACCATCATCGTCTGAGTGTCCACCACCACAATGGCCTATAACAGCTGCTGCGGCTGCTGCGGCCGCAGCACATCATTTAAGCTCACCAATATCAACACcaacacattttcaaaatgcgGCTGCAGCTGTTCTGAGTTCTGTATACGAATCTGGGTCCGATATGAATCCacttaaacgaaaaaaaatatcatcaatatcGAGTATGCTAATGTCACGAGACACACcaattttaagaaatgtatTGGCACAACCGAATAATGTTGATTCATCGCAACATACACCAATGGCCTGTACAACAATTTATAATGATCGAGGTGACCGACAAAGCACGCATTCAAATGGTACCGATTATTCAGAtaagaAAGTAAAATATGAGGAAGCACATTCTCCGTGTACAGACAAATTTGATGACGATGACAGTGCTCACAATTATAGTGTAAGTGGTGGTGGAGGTTGCGGTGGTGGCAGTGGTAGTGATTCCAGAGTAGCCTCATTAGTGCCTCAGCAGAAACCAGAATGGAAACGTTACAAACAGTACACACGGTCTGATATCTTGGCAGCTATTGAATGTGTTCGTAACGGGATGAGCGCTTTACAAGCATCACGACAATACAAAGTTCCATCAAGAACGCTTTACGATAAAGTAAAGAAATTAGGTATTACAGCGGGTCGCCCAATGAATAGAACAATTAAACGTAGTCCAAGTAATAACGGTAGTCCTGCAGCATTTCCATTTGGAATTAGTGGTACAAGAAGTCCATATCAACATAGCTTAGACAATCAATCCCACACACAATCTCACAATGATTCAGAAAATTGTGGCGATATCGATCGTGATCGTAAACATCATTTACCATCAACAATACCACATTCAGCGGCTACATTACTCGATGCAACATTTTTTCAGCAAGCTCTTGAGGGTCGCGGTGGTGATATTGCAGGACGTGATGCATTACATGCAATGGCATTAGCAGCAGCAGCTCATGCAGCCGTTAATGGAATGTCAACAAGTCCTGGTACACATGGTACAGCTAGATCACCTAGCCCAAGtgtttcaatgaaatatatgcGACCTCCCAGTCCTAATAATATTAGTGGTGAACAAGAAAACAATCATATTCAACAACAAGCTCAACAACAACTTCATCTTCATCACCATTTACAGTTACCATTACTACCACATCAACAACAAATGCCACCCCTACCACCACAATCTATGTCGTCTATACAAGATGACGATGAAGATCATGTAGAAGATCTATCAATGGCTAAAAAAGATAATTCGTCAGTAAGTCCGCCACCAGCCCATGTATCTGCACATCAACTTGGTGTTATTGTTCCGCCCATGACAAAAGTTTCATCAAATAGTAAAgacgataataatttaacaccTATTATTAAACATGAAATAACTATCGACGAAAATTAG
- Protein Sequence
- MGGSEGQTYCLRWNNHKSNLVEILATLFHKEYNVDCTCTIYVDEQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQPFEMRALLEYMYTGEVNVTQSQIPRIMQIAEQLEVKGLFDMTDLKDKFDKIKMDDTPNYSPNIQNAQSNNNKVQNNQQSSPIISTSTNISSSAQSSSSSPPYNYKSHYSSIFSRSPVPSSSECPPPQWPITAAAAAAAAAHHLSSPISTPTHFQNAAAAVLSSVYESGSDMNPLKRKKISSISSMLMSRDTPILRNVLAQPNNVDSSQHTPMACTTIYNDRGDRQSTHSNGTDYSDKKVKYEEAHSPCTDKFDDDDSAHNYSVSGGGGCGGGSGSDSRVASLVPQQKPEWKRYKQYTRSDILAAIECVRNGMSALQASRQYKVPSRTLYDKVKKLGITAGRPMNRTIKRSPSNNGSPAAFPFGISGTRSPYQHSLDNQSHTQSHNDSENCGDIDRDRKHHLPSTIPHSAATLLDATFFQQALEGRGGDIAGRDALHAMALAAAAHAAVNGMSTSPGTHGTARSPSPSVSMKYMRPPSPNNISGEQENNHIQQQAQQQLHLHHHLQLPLLPHQQQMPPLPPQSMSSIQDDDEDHVEDLSMAKKDNSSVSPPPAHVSAHQLGVIVPPMTKVSSNSKDDNNLTPIIKHEITIDEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00285356;
- 90% Identity
- iTF_00285356;
- 80% Identity
- iTF_00285602;