Csub009275.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- lola_1
- Assembly
- GCA_011634745.1
- Location
- JAABKK010007667.1:27720089-27722195[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.8 1.7e+03 -0.6 0.0 1 14 228 241 228 250 0.83 2 3 1.5e-11 3.3e-08 33.7 0.0 3 45 378 420 376 420 0.92 3 3 0.036 77 3.7 1.1 4 20 510 525 509 525 0.93
Sequence Information
- Coding Sequence
- ATGGGTGGTAGCGAAGGTCAAACATATTGTTTGCGATGGAACAATCACAAATCGAATTTAGTTGAAATTTTAGCAACACTCTTTCATAAAGAGTATAACGTTGACTGTACATGTACAATATATGTAGATGAACAAGTTCAATTTAAAGCACATCGCGTTGTTTTAGCAGCTAATTCACCATATTTCCAATCAATTTTACAAGATGTTCCAATGGATCATTGCAGTATATTATTCCCGGGAGTTAAGCCATTTGAAATGCGGGCTCTACTGGAATATATGTATACCGGTGAAGTGAATGTTACTCAATCACAATTACCACGAATTATGCAAATTGCTGAGCAATTGGAAGTGAAGGGGTTGTTTGATATGACCGACATGAAAGACAAATttgataaaactaaaatgGACGATACACCAAATTATTCACCTAATACTCAAAATGCACaatcgaataataataaagtacaaAACAATCAACAATCAACACCGATCATTTCAACACCAACAAATATATCATCATCAGCTCAAAGCAGCAGTTCGTCACCACCATATAATTACAAATCGCATTATTcaagtatattttcacgaagTCCAGTACCATCATCGTCTGAGTGTCCACCACCACAATGGCCTATAACAGCTGCTGCGGCCGCAGCACATCATTTAAGCTCACCAATATCAACACcaacacattttcaaaatgcgGCTGCAGCTGTTCTGAGTTCTGTATACGAATCTGGGTCCGATATGAATCCacttaaacgaaaaaaaatatcatcaatatcGAGTATGCTAATGTCACGAGACACACcaattttaagaaatgtatTGGCACAACCGAATAATGTTGATTCATCGCAACATACACCAATGGACTGTACAACAATTTATAATGATCGAAGTGACCGACAAAGCACGCATTCAAATGGTACCGATTATTCAGAtaagaAAGTAAAATATGAGGAAGCACATTCTCCGTGTACAGACAAATTTGATGACGATGACAGTGCTCACAATTATAGTGTAAGTGGTGGTGGAGGTTGCGGTGGTGGCAGTGGTAGTGATTCCAGAGTAGCCTCATTAGTGCCTCAGCAGAAACCAGAATGGAAACGTTACAAACAGTACACACGGTCTGATATCTTGGCAGCTATTGAATGTGTTCGTAACGGGATGAGCGCTTTACAAGCATCACGACAATACAAAGTTCCATCAAGAACACTTTACGATAAAGTAAAGAAATTAGGTATTACAGCGGGTCGCCCAATGAATAGAACAAAACGTAGTCCAAGTAATAAAGGTAGTCCTGCAGCATTTCCATTTGGAATTAGTGGTACAAGAACTCCATATCAACACACACAATTTCACAATGATTCAGAAAATTGTGGCGATATCGATCGTGATCGTAAACATTTATTACCATTAACAATACCACATTCTGCGGCTACATTACTCGATGCAACATTTTTTCAGCAAGCTCTGGAGAGTCGCGGTGGTGATATTGCAGGACGTGATGCCTTACATGCAATGGCATTAGCAGCAGCAGCTCATGCAGCCGTTAATGGAATGTCAACAAGTCCTAGTACACATGGTACAGCTAGATCACCTAGCCCAtgtgtttcaataaaatatatgcgaCCACCCAGTCCTAATAATATTAGTGGTGAACAAGAAAACAATCATATTCAACAACAAGCTCAACAACAACTTCATCTCCATCACCATTTACAACTACCATTACTACCACATCAGCCTCAAATGCCACCCCTACCACCACAATCTATGTCGTCTATTCAAGATGACGATGAAGATCATGTAGAAGATCTATCAATGGATAGAAAAGATAATTCGTCAGTAAGTCCGCCACCAGTTCATGTATCTTCACATCAACTGGGTGTTATTGTTCCGCCCATGACAAAAGTTTCATCAAACAGTAAagaagatattaatttaacacCTATTATTAAACATGAAATAACTATCGACGAAAATTAG
- Protein Sequence
- MGGSEGQTYCLRWNNHKSNLVEILATLFHKEYNVDCTCTIYVDEQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVKPFEMRALLEYMYTGEVNVTQSQLPRIMQIAEQLEVKGLFDMTDMKDKFDKTKMDDTPNYSPNTQNAQSNNNKVQNNQQSTPIISTPTNISSSAQSSSSSPPYNYKSHYSSIFSRSPVPSSSECPPPQWPITAAAAAAHHLSSPISTPTHFQNAAAAVLSSVYESGSDMNPLKRKKISSISSMLMSRDTPILRNVLAQPNNVDSSQHTPMDCTTIYNDRSDRQSTHSNGTDYSDKKVKYEEAHSPCTDKFDDDDSAHNYSVSGGGGCGGGSGSDSRVASLVPQQKPEWKRYKQYTRSDILAAIECVRNGMSALQASRQYKVPSRTLYDKVKKLGITAGRPMNRTKRSPSNKGSPAAFPFGISGTRTPYQHTQFHNDSENCGDIDRDRKHLLPLTIPHSAATLLDATFFQQALESRGGDIAGRDALHAMALAAAAHAAVNGMSTSPSTHGTARSPSPCVSIKYMRPPSPNNISGEQENNHIQQQAQQQLHLHHHLQLPLLPHQPQMPPLPPQSMSSIQDDDEDHVEDLSMDRKDNSSVSPPPVHVSSHQLGVIVPPMTKVSSNSKEDINLTPIIKHEITIDEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00285603; iTF_00285357; iTF_00285602;
- 90% Identity
- iTF_00285603; iTF_00285357; iTF_00285602;
- 80% Identity
- iTF_00285603;