Csub025120.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- dl_4
- Assembly
- GCA_011634745.1
- Location
- JAABKK010004192.1:218-2311[+]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.9e-53 2e-49 168.5 0.3 1 167 37 206 37 208 0.96 2 3 3.6 1.5e+04 -3.6 0.5 109 117 333 341 318 367 0.43 3 3 2.9 1.2e+04 -3.3 0.3 148 156 518 526 505 536 0.49
Sequence Information
- Coding Sequence
- ATGAATAACAGCAcgtcaaataattcaaatggaAATGAATGGGAACACAATCATAGttctcataaaaaaatatcaacatcTTACGAACCTAACATTTCAGATGCCTACATTAAAATAACAGAACAACCAGCTTCAAGGTTAATacgttttcattataaaagtCAAAGAAATTCTGGTGATGTAATGGGCGCGAATTCatcaaatactttaaaaacttACCCCAGTATAAAGGTAGTCGGATACACTGGCAAAGCTACTGTTGTTATTTCCTGTGTTTCGGACGAACCGCCATATCGACCGCATCCACATAAATTGGTGGGTAAAAAAGCATCAGATGGGGTTATCGTAGCTGacataaaaaatgatgatatgagtatcatttttgataaaatgggAATTCAATGCGTAAAGATAGCTGATATCGAGGATTCACTAAAGCTAAGACGAACACAATCTATTGATCCATTCAGaacTGGTAATGatcgaaaaataaacattcgtaccataaatttaaatgctataCGACTTTGTTTTCAAGTTATGGTTATggtatttgataaaaatgaaaaaaagcacaaaaaaGTGGCGCTTAAGCCAGTCGTATCTGATGCAATAttagaaagaaaatcaaatccagagttaattatatataatattagtgATGTGACGTCGTCAGTTTCgggtggaaaaaaaataatgatattttgtgATAAAGTAAAATCAGATGATACTTTTGTTCGAATTTTCGAAAGAAGCAATGAAAAAACAGTATGGGAAagtataatacatttaaacgGTAATAGTATACATCGAAAAACAGCCATTGTTTTTATAACACcaaaatataaagatataGATATTGATGAACCTGTTAAAGTAAACTTACAACTTTTAAGGCCATCGGATAATTCTACAAGTGAATCAATAGTATTTGAGTACGTTCCATTGGAATCAAgtattcaaattaatcgaaaacgaaaaaaaattcataatgaaAGGACAgtacataaatttgatttattagaAAAGCAACAACAAGAGCCATGCGATGACCATGAAAGCATGAATAtacaaaagaataataaaacgaTGGATCAACTGACTAACAATTCAAGTCGTGGGCAACCTTTATTAGCATTAAATGGTCAACGAATATACGATCAAGCTGATGCAGGTATATCACCAGGATATAGTGATTACCCAATGCAAACATCTATGCCATCGCAACATATGCAATCATTTAACATAAATGCACCAATAACATTTCATCCTGAGCACCCacattatatgaattttaatggtggttgcaatttaaattttccatcatCACCATATAATAGTCAACAACAATTGACGGATTTGCAAGGAGCAGTTGATaggaattttattgaaaactatCAAAACATTCTACCCGAATGGAAtatgacccaaaatattatttctagtaATGTTTATATGGATGTTAATTGTTCAGCAGCATCAAAATTTCCAGGAAACTATGTTTTTCCAGTATCAAAAGaacaagaacaacaacaacaacagcaaaaacaacaacaacatcaacaacgaTATCATCAACCTTTACAACCAATTCTGAATAACTCAGTAGATTacaactatttattaaaatcagtaATTCCAACGCAGCAGTTGCGACAAACGAATCCACATGATTTCTGTGCTAATCTTATAGATATTGACGATAATATTTCAGTTCGACTGGAATCTGAATCAGTGACTGGgaataattcaaatgaaaataatgaaaatattgagcGAGTTATCACCACTCTCGacgatttattataa
- Protein Sequence
- MNNSTSNNSNGNEWEHNHSSHKKISTSYEPNISDAYIKITEQPASRLIRFHYKSQRNSGDVMGANSSNTLKTYPSIKVVGYTGKATVVISCVSDEPPYRPHPHKLVGKKASDGVIVADIKNDDMSIIFDKMGIQCVKIADIEDSLKLRRTQSIDPFRTGNDRKINIRTINLNAIRLCFQVMVMVFDKNEKKHKKVALKPVVSDAILERKSNPELIIYNISDVTSSVSGGKKIMIFCDKVKSDDTFVRIFERSNEKTVWESIIHLNGNSIHRKTAIVFITPKYKDIDIDEPVKVNLQLLRPSDNSTSESIVFEYVPLESSIQINRKRKKIHNERTVHKFDLLEKQQQEPCDDHESMNIQKNNKTMDQLTNNSSRGQPLLALNGQRIYDQADAGISPGYSDYPMQTSMPSQHMQSFNINAPITFHPEHPHYMNFNGGCNLNFPSSPYNSQQQLTDLQGAVDRNFIENYQNILPEWNMTQNIISSNVYMDVNCSAASKFPGNYVFPVSKEQEQQQQQQKQQQHQQRYHQPLQPILNNSVDYNYLLKSVIPTQQLRQTNPHDFCANLIDIDDNISVRLESESVTGNNSNENNENIERVITTLDDLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -