Cpin022668.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- ZIPIC_1
- Assembly
- GCA_963556745.1
- Location
- OY750788.1:3698922-3704034[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.35 25 6.1 0.5 2 23 178 200 177 200 0.93 2 11 0.052 3.7 8.7 0.1 2 23 205 226 204 226 0.96 3 11 0.84 61 4.9 0.6 1 23 230 253 230 253 0.94 4 11 0.04 2.9 9.0 3.9 1 23 257 280 257 280 0.96 5 11 0.00033 0.024 15.6 3.6 1 23 283 306 283 306 0.98 6 11 0.0074 0.53 11.3 0.7 1 23 309 332 309 332 0.95 7 11 0.087 6.3 8.0 0.3 3 20 341 358 340 360 0.92 8 11 6.3e-05 0.0046 17.8 0.1 2 23 373 395 372 395 0.94 9 11 9.4e-07 6.8e-05 23.6 0.7 1 23 401 424 401 424 0.98 10 11 0.00018 0.013 16.4 0.8 3 23 435 455 434 455 0.97 11 11 0.0051 0.37 11.8 0.2 1 23 461 484 461 485 0.94
Sequence Information
- Coding Sequence
- ATGACAGGTGTGATGGATTTGGAGACTCAATCATCTGTAGAAGAGACTTTGTTATGTTGGGAATGCCACTCCACACTTCGGAAACTTGCCAAATTCCAAAATCAAGTCAGACGAGCAAATCAAATCCTACAAAATGGACAGAGCCACATCTACGGCACTCTATCATGTTTGACGACAGTCATTAAAGCTGATGCAGAACCTCATACCATATACTTTAACGAATCAAGCATAAACGTGAAAcaggaaaattttaataaacagtATTCTGAAGATGAAAATGTTAACTCTCCTTTAGTAGAATACTCAACAGAATGTGATGATACAATTGCAGATAGTGTTTTTGATAGGACTGTAAAAGAtgaaattattgacaaaaaaGAAGAAACGGAACCAATCAAAGTTAATAATAAGTGGAGTAAGAAACGAGCTTTGCAGAATAAGAAACCGAAATTCAAAATACTGAAAGCAAAAGAAGTTAATGTTGATACTGTATTGAAGAGAAAGTTAGAATCtaaatctatgaaaaaaattgaatgTCTCAATTGTGATATAGGGTTCCATAGTGACAATCTTTTAATGGAACACTTTAAAAAAGTTCATGAAAAGGAATTGGTTTGCGATGTATGCTTCTTGCTAGTACCGGATAAGGAACACCTCTCAGCCCATTTGGAAACACATACTAAAAGATTTGAGTGCAGTTTGTGTGAAAATGCCTATAACAACGAAATCCATGGACGTAGGCATTTGTTGAAAGTTCACAACAAAATCTTTCGGTGTGTTCAGTGTGAGTTGATGTTCGCttctCGCCGCGAGTTTTTCCAACATTACAAAGAGTGTCATGAAAAGTTTACTTGCGATTATTGTGGCGTCAGTTTCAAAATGAGATACTGTATTAAAGACCACATCAGGAAACAACATTCTCCATACGAATGTAAGCCATGTAACAAAAGATTTGCCCGTTACAATGGCCTATGGCTTCACAACAAAGTCAGACACGGTCCTCCTGCCCAAACTGCTTACTGCGTAGAATGTGATAAATGCTATCCTGATGTATATCGGTACAAGTGGCATTTGGCTAACAGCGTGAAACATAAACCTAGGAAGAAAGTCAGaatacctTGTCCGGATTGTGACAAAGTATTTACAAAGAACATTTATATGAAAGATCATTACAACTTAGTACATTTGAAGCAGTATAAATATCGGTGTGAAGATTGTGATAagaatttcatCAGAAATGCCGATTTAGTGAAACATAAGAAGCGTGTACATGAAGGGATTTTGCCGCCGAAAAACAAGATTTGCTACATGTGTGGAAGGGGCTTTACTACCAACAAGATACTGACGAACCACCTCCGAACACATACAGGCGAGCGCCCGTTCGCGTGCGGCTCGTGCCCCGCTCGGTTCGCGCAACGAACGGCGCTCACGAGCCACGCGCGAGCGTTACACCATAGCGAGCGGAACGACACGTAA
- Protein Sequence
- MTGVMDLETQSSVEETLLCWECHSTLRKLAKFQNQVRRANQILQNGQSHIYGTLSCLTTVIKADAEPHTIYFNESSINVKQENFNKQYSEDENVNSPLVEYSTECDDTIADSVFDRTVKDEIIDKKEETEPIKVNNKWSKKRALQNKKPKFKILKAKEVNVDTVLKRKLESKSMKKIECLNCDIGFHSDNLLMEHFKKVHEKELVCDVCFLLVPDKEHLSAHLETHTKRFECSLCENAYNNEIHGRRHLLKVHNKIFRCVQCELMFASRREFFQHYKECHEKFTCDYCGVSFKMRYCIKDHIRKQHSPYECKPCNKRFARYNGLWLHNKVRHGPPAQTAYCVECDKCYPDVYRYKWHLANSVKHKPRKKVRIPCPDCDKVFTKNIYMKDHYNLVHLKQYKYRCEDCDKNFIRNADLVKHKKRVHEGILPPKNKICYMCGRGFTTNKILTNHLRTHTGERPFACGSCPARFAQRTALTSHARALHHSERNDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035087;
- 90% Identity
- iTF_00035087;
- 80% Identity
- -