Agen026482.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- ZIPIC
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000328.1:308092-315506[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.3 61 6.1 0.2 2 23 176 198 175 198 0.93 2 11 0.015 3.1 10.2 0.2 2 23 203 224 202 224 0.96 3 11 0.78 1.6e+02 4.8 3.1 1 23 228 251 228 251 0.97 4 11 0.0034 0.69 12.2 1.1 1 23 255 278 255 278 0.96 5 11 0.00037 0.074 15.3 3.7 1 23 281 304 281 304 0.98 6 11 0.0066 1.3 11.3 0.7 1 23 307 330 307 330 0.95 7 11 0.15 30 7.1 0.1 3 20 339 356 338 358 0.92 8 11 5.7e-05 0.011 17.8 0.1 2 23 371 393 370 393 0.94 9 11 8.5e-07 0.00017 23.6 0.7 1 23 399 422 399 422 0.98 10 11 0.00016 0.032 16.4 0.8 3 23 433 453 432 453 0.97 11 11 0.0024 0.48 12.8 0.4 1 23 459 482 459 483 0.94
Sequence Information
- Coding Sequence
- ATGGTTTTCAAACGGGAAACACAATCATCTGTAGAAGAGACTGCGATATGTTGGGAATGCCACTCCATACTTCGGAAACTTGCCAAATTCCAAAATCAAGTCAGACGAGCAAATCAAATCCTACAAAGTGGACAGAGCCACATCTACGGCACCCTGTCATGTTTGACGACAGTTGTTAAAACTGATACAGAACCACATACCATTTATTTTAACGAATCAAGCATAAACGTGAAACGGGAAGATTATGATAAACAGTATTCTGAAGACGATAATGTTAATTCTCCTTCAGGAGAATACACAAAAGAGTGTGATGATACAATTGCGGATATTGTTTTTGATACTACTGTAAAAGATGAAATTATTGACAAAAAAGTAGAAACCgaaccaattaaagttaataataaGTGGAGTAAGAAACGAGCTTTGCAGAATAAGAAACCCAAATTCAAAATACTGAAAGCAAAAGAAGTTAACGTTGATACTGTGTTGAAGAAAAAGTTAGAATCTAAatctatgaaaaaaattgaaTGTCTTAATTGTGATATGGGGTTCGATAGTGACAATTTTTTAATGGAACACTTCAAAAAAGTTCATGAAAAGGAATTGGTTTGCGATGTATGCTTCTTGCTAGTAACGGATAAGGAACACCTCTCGGCTCATTTGGAAACACATACTGAAAGATTCGAGTGCagtttgtgtgaaaatgtctgCAACAACAAAATCCATGGACGTAGGCATTTGATGAAAGTTCACAACAAAATCTTTCAGTGTGTTCAGTGTGAGTTGATGTTCGCtTCTCGCCGCGAGTTTTTCCAACATTACAAAGAGTGGCATGAAAAGTTTACTTGCGATTATTGTGGCGTTACTTTCAAAATGAGATACTGTATTAAAGACCATATCAGAAAACAACATTCTCCTTATGAATGTAAGCCATGTAACAAAAGGTTTGCCCGCTACAACGGCCTATGGCTTCACAACAAAGTCAGACACGGCCCACCAGCCCAGACTGCTTACTGTGTAGAATGTGATAAACGCTATCCTGATGTGTATAGGTACAAATGGCATTTGGCAAATAGCGTGAAACATAAGCCTAGGAAAAAAGTCAGAATACCTTGCCCGGATTGTGACAAAGTATTTACCAAGAACATTTATATGAAAGATCATTACAATTTAGTACATTTGAAGCAGTATAAATATAGATGTGAAGATTGTGATAAGaattttatcAGGAATGCAGATTTAGTGAAACATAAGAAGCGTATACATGAAGGGATTTTGCCGCCGAAAAACAAGATTTGCTACATGTGTGGAAGGGGCTTTACTACCAACAAGATACTGACGAACCACCTCCGAACACATACAGGCGAGCGCCCGTTCGCGTGCGGCTCGTGCCCCGCTCGGTTCGCGCAACGAACAGCGCTCACGAGCCACACGCGAGCGTTACACCATAGCGAGCGGAACGACACGTAA
- Protein Sequence
- MVFKRETQSSVEETAICWECHSILRKLAKFQNQVRRANQILQSGQSHIYGTLSCLTTVVKTDTEPHTIYFNESSINVKREDYDKQYSEDDNVNSPSGEYTKECDDTIADIVFDTTVKDEIIDKKVETEPIKVNNKWSKKRALQNKKPKFKILKAKEVNVDTVLKKKLESKSMKKIECLNCDMGFDSDNFLMEHFKKVHEKELVCDVCFLLVTDKEHLSAHLETHTERFECSLCENVCNNKIHGRRHLMKVHNKIFQCVQCELMFASRREFFQHYKEWHEKFTCDYCGVTFKMRYCIKDHIRKQHSPYECKPCNKRFARYNGLWLHNKVRHGPPAQTAYCVECDKRYPDVYRYKWHLANSVKHKPRKKVRIPCPDCDKVFTKNIYMKDHYNLVHLKQYKYRCEDCDKNFIRNADLVKHKKRIHEGILPPKNKICYMCGRGFTTNKILTNHLRTHTGERPFACGSCPARFAQRTALTSHTRALHHSERNDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00284862; iTF_00036095;
- 90% Identity
- iTF_00284862; iTF_00036095;
- 80% Identity
- -