Cpin022666.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- Bcl11b
- Assembly
- GCA_963556745.1
- Location
- OY750788.1:3685321-3693310[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.035 2.5 9.2 4.4 1 23 231 254 231 254 0.90 2 11 0.0011 0.081 13.9 0.2 2 23 262 283 262 283 0.97 3 11 0.19 13 6.9 3.0 2 23 288 310 287 310 0.97 4 11 5.1 3.7e+02 2.4 4.9 1 23 314 337 314 337 0.93 5 11 3.4e-06 0.00025 21.8 2.0 3 23 342 362 340 363 0.94 6 11 0.0013 0.095 13.7 1.9 2 23 367 389 367 389 0.97 7 11 0.0057 0.41 11.7 0.4 3 22 404 423 403 427 0.91 8 11 3.4e-05 0.0024 18.7 0.1 2 23 436 458 435 458 0.96 9 11 0.0056 0.41 11.7 5.2 1 23 464 487 464 487 0.97 10 11 7.3e-05 0.0053 17.6 1.0 2 23 497 518 496 518 0.97 11 11 6.7e-05 0.0048 17.8 2.1 1 23 524 547 524 547 0.98
Sequence Information
- Coding Sequence
- ATGTATTCCGTAAAAGTTGAGACAGATAGAAGACTCTCCATTTGCCGCGGTTGCCTCAGCACAGATAGAAAAGTTGTATTTCCACGAGATCGTCTCGACATATTTTTCACACTTTTGGGAGTGCAACAGGAATATTACgagACACAAGTTTTATTATGTTGGGAGTGTATAGCAcatcttaaaaatatacaaaaattcaaaaataggaTTCATGATGCTCAATTTATATTGCAACAGTCTTTATATGAGTTgGATATACCCATCACACCACTATCCACACTTTCGAAAGTCACAAAAGTATTTTACGATAGCACAATAGATTATGAATTGTCTAAActagaaaaagaaacaaaagaagaCACCAATGACGAAATAattaaacaagaaaatattgacAATGAATCCTCACCTGATACTTATAGTGATAATGATATTATAACAATAGACTACAACAAATTGAAACAATTAGACGTAATAGAAAAGCCAATAGTATCAgatagtaagaaaaaaaaaacatggtgGGAAAGAAAACAGAgcatcaaaaagtatgaaagtAAAGCAACGGTGAAAAAGTTGAAGGAAAATGAGGCTGATTTAGAAAAGCCATGGTTCAAAGTGAACCTTATGGAGAAGGAAATAGAGGAAGTGTTATTGAGAGACAAAGTTAACTATGGATTTAGGAAACTGCCTCATAAATGCACTGAGTGTGAGAACTCTTATAAGCGACTCGTCGATTTTCGGAGACACAAGACTTTTAATCATGCAAAGGCATCTTCACCAAGGAAATGTACTGAGTGTAACGCTAAAGTTAGTTCTTGGGAAGCGTTACAGAAGCACTGGGACAAACACAATATTTACAACAAATGCCATTTGTGTGGTTGGCTCTCACATTCTGAAGCCTCTATGACCAAGCACTATAGAAGAGTACACACAGCTGTGTACTGTTGTAACTCATGCAGTGTACAGTGTCGaaCATTAAGAGAATTTAGTAAACATTACATAGAAGCACACGAAAGAATAATATGTGATTATTGCGGCAAAAATTTCTTCAGGAAACGTTCTCTTGAAGTacatattaaACGCCATCACCTTCCCGCAACTTGCTTTGAATGCAACAAAACATACGCACAATACCATGTATTAGAGAACCACTATAGGATGTACCACCCGCATAAGCTCAAAGCTGACACCCGAACCGAACTAGCATATTGCGTCGAGTGTGACAAACAATTCCCTAGCGTTTATAAGtacaaGAGACACTTGGCCACCGCTACTAAACACACGCCGCCTAAACCAGTCAGAGTGCCGTGTCCGGAATGTGATAAAGTATTCGCGCGTAAGGTCCGGATGACGAACCACCTCAATTCCGTACATAGAAACACTTCGAAACACCGATGTGATATATGTAATAAGAATTTCTGTTCTGCATTTTCGGCGAGAACGCACAGACAACGCGTACACGAAAAAATACCGTTGccgaaaaacaaaatgtgtGATATATGTGGACGAGGTTTTAGTACTAACAGAATCCTCACCAACCATCGCCGGACGCATACCGGTGAAAGACCATACAAATGCAGCCATTGTCCAGCAACCTTCGCTCAACGCACCGCCATGAAAACCCACGAAAGGACTCAACATAAGGCTCAGTGGGACTCAAACAGTGCACTATCCGCCGCTGCTACTATGCTAGAGTTGGGGGATAGGAACGAACATTGA
- Protein Sequence
- MYSVKVETDRRLSICRGCLSTDRKVVFPRDRLDIFFTLLGVQQEYYETQVLLCWECIAHLKNIQKFKNRIHDAQFILQQSLYELDIPITPLSTLSKVTKVFYDSTIDYELSKLEKETKEDTNDEIIKQENIDNESSPDTYSDNDIITIDYNKLKQLDVIEKPIVSDSKKKKTWWERKQSIKKYESKATVKKLKENEADLEKPWFKVNLMEKEIEEVLLRDKVNYGFRKLPHKCTECENSYKRLVDFRRHKTFNHAKASSPRKCTECNAKVSSWEALQKHWDKHNIYNKCHLCGWLSHSEASMTKHYRRVHTAVYCCNSCSVQCRTLREFSKHYIEAHERIICDYCGKNFFRKRSLEVHIKRHHLPATCFECNKTYAQYHVLENHYRMYHPHKLKADTRTELAYCVECDKQFPSVYKYKRHLATATKHTPPKPVRVPCPECDKVFARKVRMTNHLNSVHRNTSKHRCDICNKNFCSAFSARTHRQRVHEKIPLPKNKMCDICGRGFSTNRILTNHRRTHTGERPYKCSHCPATFAQRTAMKTHERTQHKAQWDSNSALSAAATMLELGDRNEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00036057;
- 90% Identity
- iTF_00035079;
- 80% Identity
- -