Astr031239.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- znf711
- Assembly
- GCA_950108535.1
- Location
- OX467327.1:4962482-4988016[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.035 3.2 9.4 3.4 1 22 234 255 234 257 0.90 2 11 0.036 3.3 9.3 0.4 2 23 265 286 265 286 0.96 3 11 0.21 19 6.9 3.0 2 23 291 313 290 313 0.97 4 11 4.5 4.1e+02 2.7 4.0 1 23 317 340 317 340 0.92 5 11 5.9e-06 0.00054 21.2 2.2 3 23 345 365 343 366 0.94 6 11 0.0016 0.14 13.6 1.3 3 23 371 392 370 392 0.97 7 11 0.0064 0.59 11.7 0.4 3 22 407 426 406 430 0.91 8 11 0.00018 0.016 16.6 0.1 2 23 439 461 438 461 0.94 9 11 0.0063 0.58 11.7 5.2 1 23 467 490 467 490 0.97 10 11 8.2e-05 0.0075 17.6 1.0 2 23 500 521 499 521 0.97 11 11 5.1e-05 0.0047 18.3 2.2 1 23 527 550 527 550 0.98
Sequence Information
- Coding Sequence
- ATGTATTCCGTAAAAGTTGAGATAGATAAAAGACTCTCCATTTGCCGCGGTTGCCTCGGCACAGACAGAAAAGTTGTACTTCTACAAGATCGTCTCGATATATTTTTCACACTTTTGGGAGTGCAACCGGAATATTACgAGACACAAGTATTATTATGTTGGGAGTGTATAGCACATCTTAAGAATatacaaaaattcaaaaataggaTTCAGGATGCTCAGTTTATATTTCAACAGTCTTTATATGAGTTGGATATACCCATCACACCACTCTCCACACTTTCGAAGGTCACCAAAGTATTTTACGATAGCACGATAGATTATGAATCATCTAAACTAgagaaagaaacaaaagaagatGCCAATGACGAAATAATTAAACAAGAAAATATCGATGAAGAATCCTCACCATCGGGTGAGGATACTTATAGTGATAATGATATTATAGCTATAGACTACAACAAATTGAAACAATTAGACGTAAGAGAAAAGCCAATAGTATCAGATAGTAAGAAAACAAAGTCTTGGTGGGAAAAAAAACAGAGCATCAAAAAGTATGAAAGTAAAGCAACGGTGAAAAAATTGAAGGAAATTGAGACTGATTTAGAAAAACCATGGGTCAAAGTGAACCTTAGGGAGCAGGAAATAGAGGATGTTTTATTGAGAGACAAAGTTAACTATGGATTTAGGAAATTACCTCATAAATGCACCGAGTGTGAGAACTCATATAAGAGACTCATTGATTTTCGGAGACACAAGGCCTTCAATCATGCAAAGCCATCTTTACCAAGGAAATGTGCAGAGTGTAACGCTAAAGTCTATTCTTGGGAAGCGTTACATAAGCACTGGGAGAAACACAATGTTTACAACAAATGCCATTTGTGCGGTTGGCTCTCACACTCTGAAGCTTCTATGACCAAGCACTATAGGAGAGTACACACAGCTGTGTACTGTTGTAACTCGTGCAATGTACAATGTCGAACCTTAAGAGAATTTAGTGAACATTACATAGAAGCACATGAAAGAATAATATGTGATTATTGCGGCAAAAATTTCTTCAGAAAACGTACTCTTGAAGTacatattaaACGCCATCACCTCCCCGCGATTTGCTTTGAATGCAACAAAACATACGCACAATACCACGTGTTAGAGAATCACTATCGAATGTACCACCCGCATAAGCTAAAAGCGGACACCAGAACCGAGCTAGCGTATTGCGTCGAGTGTGATAAACAATTCCCTAGCGTTTATAAGTacaaGAGACACTTGGCCACCGCTACCAAACACACGCCCCCTAAACCAGTCAGAGTGCCGTGTCCGGAATGTGATAAAGTGTTCGCGCGTAAGGTCCGGATGACAAACCACTTTAATTCAGTACATAGAAACACTTCCAAACACCGATGTGATATTTGTAATAAGAATTTCTGTTCTGCATTTTCGGCGAGAACGCATAGACAACGAGTACACGAAAAAATACCGTTGCCCAAAAACAAAATGTGCGATATATGCGGACGAGGTTTTAGTACTAACAGAATACTCACCAACCACCGCCGGACGCACACAGGCGAAAGACCATACAAATGCAACCACTGTCCGGCAACATTCGCCCAACGCACTGCCATGAAAACACACGAAAGGACTCAACATAAGGCCCAGTGGGACTCAAACAGTGCACTAACCGCCGCTGCTACTATGTTAGAATTGGGGGATAGAAATGAACATTGA
- Protein Sequence
- MYSVKVEIDKRLSICRGCLGTDRKVVLLQDRLDIFFTLLGVQPEYYETQVLLCWECIAHLKNIQKFKNRIQDAQFIFQQSLYELDIPITPLSTLSKVTKVFYDSTIDYESSKLEKETKEDANDEIIKQENIDEESSPSGEDTYSDNDIIAIDYNKLKQLDVREKPIVSDSKKTKSWWEKKQSIKKYESKATVKKLKEIETDLEKPWVKVNLREQEIEDVLLRDKVNYGFRKLPHKCTECENSYKRLIDFRRHKAFNHAKPSLPRKCAECNAKVYSWEALHKHWEKHNVYNKCHLCGWLSHSEASMTKHYRRVHTAVYCCNSCNVQCRTLREFSEHYIEAHERIICDYCGKNFFRKRTLEVHIKRHHLPAICFECNKTYAQYHVLENHYRMYHPHKLKADTRTELAYCVECDKQFPSVYKYKRHLATATKHTPPKPVRVPCPECDKVFARKVRMTNHFNSVHRNTSKHRCDICNKNFCSAFSARTHRQRVHEKIPLPKNKMCDICGRGFSTNRILTNHRRTHTGERPYKCNHCPATFAQRTAMKTHERTQHKAQWDSNSALTAAATMLELGDRNEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00284838; iTF_00035079;
- 90% Identity
- iTF_00035079;
- 80% Identity
- -