Cpin021457.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- rst2
- Assembly
- GCA_963556745.1
- Location
- OY750785.1:6312708-6329012[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.13 9.2 7.4 0.2 3 23 124 144 122 144 0.95 2 13 0.0018 0.13 13.2 2.8 1 23 248 270 248 270 0.99 3 13 2.8e-05 0.0021 18.9 0.4 1 23 276 299 276 299 0.97 4 13 0.099 7.1 7.8 4.8 1 23 304 327 304 327 0.93 5 13 1.5e-06 0.00011 23.0 0.7 2 23 474 495 473 495 0.97 6 13 0.00011 0.0079 17.1 2.8 1 23 501 523 501 523 0.98 7 13 0.013 0.93 10.6 3.8 1 23 638 660 638 660 0.95 8 13 0.00047 0.034 15.1 3.2 1 23 666 688 666 688 0.97 9 13 0.013 0.94 10.6 5.1 1 23 697 719 697 719 0.99 10 13 0.00013 0.0094 16.9 0.6 2 23 766 787 766 787 0.97 11 13 0.019 1.4 10.1 6.3 1 23 804 826 804 826 0.96 12 13 1.2e-06 8.5e-05 23.3 0.7 1 23 832 854 832 854 0.98 13 13 5.1e-06 0.00037 21.3 4.3 1 23 860 883 860 883 0.98
Sequence Information
- Coding Sequence
- ATGAACCAAATGCCTTCTGATATGGATCCGTTGAGTTACGAATACTCACAATATGAAAATTACAATGGCCCACCACCACCGGTACCGAACTGCAACTTTAACTTGAAAGTCGAGCAACAACAGTCTGTGAACACAGAGTTTTACAATATCTTCAACGCATTACAGCAAGAAATGTTAAACCAACAAGACAAAGTATTAacaaacttaaacaataaaaagaatGAACCGAATGTATCACATTGTTCTACAAAACAAGATACTAAACCTATTTTTAAACTCCAAGAAGACAAGCAAAAGAAGCGGTCGAAAGGCAGAACAAGTAAATACTGGtcggagaaaataaatgatgataATTTCAAATTCTACGGCTGTGCAGTATGCAATATTAGTTTTACAGCTCTCCACGAGTTAGATCAACATGTAACGGTGCACAAAGATAGAATAACAAGCTACGATTTAAAGATCAAAAACTTAATGAAAAGGAAAAAGATGAAAAaggagaaaaagaaaaagaaaaagctcggtaaaattaaaaccgaaGACATTCCGGATATTGAAATCAAACCCGAAGACGGTTACATTGGTAATGAGAAAGCTACAGACTTTTTAAATCAGAATAATGAAAATCTGCCTACGAATACTGAAGAAAAGGTGGATATTAAGAATGAGATCGGTTGTAAAGATAATGGTGAGAGTGCGTCCGATGCAGACCAGCAATCATTGATGAACTTACAGAAAATCTACAAATGCTTCGCTTGCCAAAAACAGTTTACATTAAGTTACTACCTCAAACTGCATGTTCGGTCTCATAcagATGAGAAACCCTACACTTGTTCAGTCTGTGGCCAGTCGTTCATTACTGCAAGTAAATTAGGGAGGCACAACAAAAGAATACACTTAGCAATCAGACACCAATGTCGGATCTGCTATAGGTACTtctcaaaATTTGAAAACTTGACGATTCATTTTGACAAGAAACATCTAGAAGACAAGCTAGAAGGAGAACCATATGatTATAACGCAATACTGCCATACTTGAAAGAGCTAGAAGAAGAACTGAGAGAGAAAGCAGAGAAGGCGGAAAAAGAGAAAGCGAAGGTCAATGACCCTTGGGACATGTGGGCAACTGGCGGAGACTTGGTGCCCAagGAAGAAACTAAGGACCCAGAAACGGACCCCCACCCGGCCCCCGATACCATAGCGATAGAGGTTGTCAAATTGGACCCCCCTGACGTTGAAATTAAGGAGGAACCCGAAGATCCCCCACAGGATACCCTGAAGTCGGAAGACGAGGATAGCGTTAAAGATGAGAGgTTATCTGATGACGACTATTTCCCCTCCAACACGTGGGCAGTGTCCCCCAAAATAGAGGACCCCCCATCCCCAAAAACAAGGGGGGCTAAGTCCGCAGGCCTCCTAAAATGTACAGTTTGTGAGAAAACTTTGAGCACCGCATCATATTTGAGGATTCATATGAGAACGCATACAGGAGAGAAACCGTTCAAATGTTATATTTGCGATAGAGGGTTTATAACTTCGAGCAAGATGCATAGACATGTTTTGACACATGAAGAGAGCTGGGAAGGTGATGATGCTCCGTTGAAAGCTGAAGACATCAAACAGGACCCTGACAATGAAGATGACGAGAAGACCAAGACCAAGAAGTTGGTGAAGAAAGCAAAAGCGAAATTCAACAGCAAATCGAAAGGGGATAAGGTGAAGAAGTACAAGAGCCGTCCGCACTCCTGCGAGTTCTGCCAGAAGAAGTTCCTGCACCTGGAGACGCTGCAGGTCCACAAGAAGTGCCACGAAGGCGAAGAGTTGATCCTAAAATGCGGTTTCTGCCTCGAGGTGATGTTGGACGAGGCGAAGCTGAAGGAACACGAGGCGACCCACACTGGACCCAGGCCTTACTTGTGTACCATATGTGGCCGGACTTATAAGAAGAGGGAGACTATGGTATACCACAGAAAACACCACAAACCCGACAAAGAATTCCAATGCAACGTTTGTTCTAAGAGCTTCAACGCCTCTTGCAagttacagcgccatctagtgagcCACAGAACAGACAAGTTTGTGCTCAGATACGAGTGTCCAGTCTGCGCGCATATGTTCCATACGAAATATCACGTGCAAATGCATTTATCGACGCACCAAAAGGAAGGATTAATCGTGGAAGAAAATCGCAACGAAATACTAGCGATGGTGTTGCAAAACGCCAGAAAATTCCCCAAACAACCCGACGGGGCGGCGAGCACGCCAGATTTAATACCCAACGACGAAAGATCCCGAGTTTGCAACATTTGCGGGGAAGTGTTCCAACACTTCTATTACTTAGAAGAGCATCTAAAAAGTCACGGCTCAAAAATTGCAATAGAAGACCTAAATAAGGCCGAAGAGAAAAAACACGTTTGCCAAGTCtgcaataaaagttttaaattacacTACTATTTGAAATTACACAGTTTTACACACACCAAAGAGAAACCTTATATTTGCCAGCAGTGTGGTAAAGGATTCATTACTAAAGGCAAATTGAAGAGACACTTAGAAACACATTCGGGTTTAAAGAAATACCAGTGTCATATATGTTATAAGTTTTTCACTAGAACTAGTTATTTGAGAATACACGTTAGAACTATCCACGGCACGCAGGATTATAACTTTAGATTGCAAAAAGGATATTCGCTGGATATGCAGAGGTACCAGGACCAGGatgtacaaatataa
- Protein Sequence
- MNQMPSDMDPLSYEYSQYENYNGPPPPVPNCNFNLKVEQQQSVNTEFYNIFNALQQEMLNQQDKVLTNLNNKKNEPNVSHCSTKQDTKPIFKLQEDKQKKRSKGRTSKYWSEKINDDNFKFYGCAVCNISFTALHELDQHVTVHKDRITSYDLKIKNLMKRKKMKKEKKKKKKLGKIKTEDIPDIEIKPEDGYIGNEKATDFLNQNNENLPTNTEEKVDIKNEIGCKDNGESASDADQQSLMNLQKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCSVCGQSFITASKLGRHNKRIHLAIRHQCRICYRYFSKFENLTIHFDKKHLEDKLEGEPYDYNAILPYLKELEEELREKAEKAEKEKAKVNDPWDMWATGGDLVPKEETKDPETDPHPAPDTIAIEVVKLDPPDVEIKEEPEDPPQDTLKSEDEDSVKDERLSDDDYFPSNTWAVSPKIEDPPSPKTRGAKSAGLLKCTVCEKTLSTASYLRIHMRTHTGEKPFKCYICDRGFITSSKMHRHVLTHEESWEGDDAPLKAEDIKQDPDNEDDEKTKTKKLVKKAKAKFNSKSKGDKVKKYKSRPHSCEFCQKKFLHLETLQVHKKCHEGEELILKCGFCLEVMLDEAKLKEHEATHTGPRPYLCTICGRTYKKRETMVYHRKHHKPDKEFQCNVCSKSFNASCKLQRHLVSHRTDKFVLRYECPVCAHMFHTKYHVQMHLSTHQKEGLIVEENRNEILAMVLQNARKFPKQPDGAASTPDLIPNDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIEDLNKAEEKKHVCQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKRHLETHSGLKKYQCHICYKFFTRTSYLRIHVRTIHGTQDYNFRLQKGYSLDMQRYQDQDVQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00382957;
- 90% Identity
- -
- 80% Identity
- -