Ccar013264.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000001.1:250712685-250723304[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0041 30 6.6 0.1 26 52 161 187 155 189 0.89 2 9 0.63 4.5e+03 -0.4 0.0 23 46 186 209 183 213 0.87 3 9 0.24 1.7e+03 1.0 0.0 21 44 212 235 203 240 0.88 4 9 2.4e-05 0.17 13.8 0.0 21 52 240 271 235 272 0.90 5 9 0.073 5.2e+02 2.6 0.0 22 47 325 350 313 357 0.81 6 9 0.22 1.6e+03 1.1 0.5 23 44 382 403 371 411 0.80 7 9 1.2 8.4e+03 -1.2 0.0 25 49 412 436 406 439 0.78 8 9 0.0042 30 6.6 0.0 21 45 436 460 428 468 0.89 9 9 2.6 1.9e+04 -2.3 0.0 21 44 464 487 460 489 0.82
Sequence Information
- Coding Sequence
- ATGAATGAGTATTCAGATACTGAAGATGCGCCAGCAAGtcagGATGCAAATTCTACTTGTAccagtgaagaagaagaaggcgaTGAAAATGATGTAGAAGAAAAACACCCTTTAGAGATGGTTGAAACAGAAATAACATTTGATCAAGATGAAGAGgATGTTAGTGATGAGACAAGTTGTTCTACAGATAATAGTTCTCTCCAAACAAAAGCTTCTTCAGGAAAAGGAGCTGTTAATGATGAAAACAATGATAagaatgaACAGTATAGAAAGGATGATAACGTGGAAGATTTTGATTTCGAAAGGTATAAAAATTTGATAAGCAACTATAAAGTCTCCAATGACGAGTTTGAGAAGAGAGATTATTACGACATAACTACAGTTAATGAATTACTTGTTTGTCCTAAATGCAGTAGAGTATTTTATTCCCCCATAGAGTTTACTATACACATTCAGTGTCATATTAGCTTAACATCGTTCAAATGCCCAGAATGTTCAAAAGggtttaataataaagaaaattttagaagACATTTGAAAATACATTCAGCTATAAAACCATTTCAGTGTAACGTGTGCAATAAAGAATTTTCAGAATCGAGTAGCTTAACAAAACATATGCGTATCCATACTGGTGAGCGaccatttaaatgtaaattatgtGAGAAAGACTACACAGAATCTGGTGCGTTAAGAACCCACATGCGAACCCATACTGGCGAACGGCCTTACAAGTGCGATATATGTGAGAAAGCTTTTATTCAGTCGGGCGATTTGAAAAGACATTTGCGAATCCATGAGGGCAGCAAACCTTTTAAATGTAGTGAGTGTGATAAAGATTTTACTCTatctagtcatttaattactcATATGCGAATACACAGCGGTGAAAAACCATTTCAATGCAAAGAATGCGGGAAACATTTTTCCGATAAGGGTAACCTATTATCTCACGTGCGTATTCATAGTGGTCAAAAACCATTCAAATGTAGCGTTTGTGACAAAGTATTCTTGCTTTCTAGTCACCTAAAAACTCACTTCTTGATACACAGTGGTATAAAACCATACCAATGCGAATTGTGCGATAAAAGATTTGCATACAACTATATATTGAAAAGACATATGCAAAGTCATAGCCACATAAAACCATTTAAATGTAtcaaatgtaataaacaatttaGACGATCAAGATTATTACAGTCACATGAAAAAATTCACTCCggtgaaaaaatgtttaaatgtgcTCATTGCAATAAGGAGTTCCACGAATCGAGCTCGTTGAAAACTCATCTTCGTATTCACACCGGTGAAAAACCGTTTAAATGTACGGAATGTGATAAAGAATTCACTCAGTCTGGTAATTTGCGTACGCACATGCGTACACATACAGGAGAGCGTCCTTTCAAATGTACTAAATGCACTAAAGACTTCTGTCAGCTAATTCATTTAAGAATACACATGCAAAGTCATGATCTTAATTGA
- Protein Sequence
- MNEYSDTEDAPASQDANSTCTSEEEEGDENDVEEKHPLEMVETEITFDQDEEDVSDETSCSTDNSSLQTKASSGKGAVNDENNDKNEQYRKDDNVEDFDFERYKNLISNYKVSNDEFEKRDYYDITTVNELLVCPKCSRVFYSPIEFTIHIQCHISLTSFKCPECSKGFNNKENFRRHLKIHSAIKPFQCNVCNKEFSESSSLTKHMRIHTGERPFKCKLCEKDYTESGALRTHMRTHTGERPYKCDICEKAFIQSGDLKRHLRIHEGSKPFKCSECDKDFTLSSHLITHMRIHSGEKPFQCKECGKHFSDKGNLLSHVRIHSGQKPFKCSVCDKVFLLSSHLKTHFLIHSGIKPYQCELCDKRFAYNYILKRHMQSHSHIKPFKCIKCNKQFRRSRLLQSHEKIHSGEKMFKCAHCNKEFHESSSLKTHLRIHTGEKPFKCTECDKEFTQSGNLRTHMRTHTGERPFKCTKCTKDFCQLIHLRIHMQSHDLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283801;
- 90% Identity
- iTF_00283801;
- 80% Identity
- iTF_00283801;