Ccar038362.2
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000006.1:71925034-71948058[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00063 4.5 9.3 0.1 19 52 148 181 137 182 0.77 2 6 2.7e-05 0.19 13.7 0.1 21 52 211 242 208 243 0.88 3 6 0.23 1.6e+03 1.1 0.0 19 48 270 299 266 301 0.87 4 6 0.41 2.9e+03 0.2 0.2 26 44 362 380 358 388 0.70 5 6 0.01 72 5.4 0.2 23 47 387 411 382 413 0.91 6 6 0.0021 15 7.5 0.0 22 52 414 444 411 446 0.88
Sequence Information
- Coding Sequence
- ATGTTAACAATGAGTAATTATGCAGATGCAGCGAGTGGAAATTTGGGGAACTTTGAACTGGTTCATGTTAAACCAGAGTATTTTGGAGAATATGATTATGAGTATATAAATGAATCTAATCCTCTGGATGACAATGTGGAAACATCAGAAACGattGTTAAAACGGAAAATGATAATTTAGAAGAATTTGGGAATTTTGAATCAATTCCTTTACCAGTTgataatattaaagttaaaaagtatgAAATTGATGTGCCTATTAATTCAGAGTTAATTTTATCCGATTGTGAGGATGTTAAAAAAGCCACTGGATCAGATTCTGCAACTGATGAAgaaatgAGCGGAGATTTAATAAATGATTTCGGTATTGCCTGTCCAGATTCGACAATGTCAACATCTTATTTCAGTGCCGATCCGAATTCGAAAAGCGACGACAATTCGGCGAAAAGTCAAAAACCATACAAATGCAACACTTGTCAAATTTCATATTCGACCTTGTCAAATCTGCAAAGACATCTTCAAATACATTTTGGTGTAAAACCACACGAATGTAAATTGTGCGGTGATAAATTTTCGTTAAAAGGACAATTGAACGCGCATTTTATGTTGCATAGTACGATCGAATGGAACAGTCAAAAACCGTACAAATGCAACACTTGTCAAATTTCGTATTCGACCTCATCGAATCTGCGAAGACATCTTCAAATACATAACGGCGTAAAACCGCACGAATGTGAAGTATGCGGTGATAAATTTTCGTTAAAGGGACAATTGAATGCGCATTTTATGTTACATAGTACGATAGAATCGAACAGTGTTAAGCCATTCGAGTGTGAAATGTGCCGGATGAAATTTACACATCTAAGATACTTAAAGCATCATAAAGCAACGAAACATAAAAATGTTCGCGCGTGTGAAATATcggatgaaaattttaaaacgaaaccGGAATTACAGACGCGTGATTCGGTAAATCGTGAAATTGAAATCGTATCGTTTCAATGTAATAGATGTAAAACTGATTTTTCTACGCAACGATTGTTGAATATGCATCTATTGTCGCATGAATGCGGCAAAGAGTATGAATGCCCGATTTGTCATAATTGGTTCGCATTAAAAAGTCAACTTATTGACCATTTACTTGTACATAAAGATATCAAACCAAATATTTGCGATGTCTGTAACAGAAGATTTTCGTCGAAACGTAATTTGACAATGCATTTACAATTGCATGCCACCCGTCAACCGTATAAATGTGATATTTGCAATAGCGAATTTCTGACGCAATGGAATTTAAAAAAGCATCTTAAATCACACGCGAGCAGTAAACCGTATTTGCGTGCGATCAATGCGATACGGAATTCTCGCGATCGGGTAATTTAA
- Protein Sequence
- MLTMSNYADAASGNLGNFELVHVKPEYFGEYDYEYINESNPLDDNVETSETIVKTENDNLEEFGNFESIPLPVDNIKVKKYEIDVPINSELILSDCEDVKKATGSDSATDEEMSGDLINDFGIACPDSTMSTSYFSADPNSKSDDNSAKSQKPYKCNTCQISYSTLSNLQRHLQIHFGVKPHECKLCGDKFSLKGQLNAHFMLHSTIEWNSQKPYKCNTCQISYSTSSNLRRHLQIHNGVKPHECEVCGDKFSLKGQLNAHFMLHSTIESNSVKPFECEMCRMKFTHLRYLKHHKATKHKNVRACEISDENFKTKPELQTRDSVNREIEIVSFQCNRCKTDFSTQRLLNMHLLSHECGKEYECPICHNWFALKSQLIDHLLVHKDIKPNICDVCNRRFSSKRNLTMHLQLHATRQPYKCDICNSEFLTQWNLKKHLKSHASSKPYLRAINAIRNSRDRVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283910;
- 90% Identity
- iTF_00283910;
- 80% Identity
- iTF_00283910;