Ccar053282.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000015.1:14493120-14518695[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.2e-07 6.7e-05 24.9 2.9 1 23 158 180 158 180 0.98 2 20 3.9e-05 0.0062 18.7 0.9 1 23 186 208 186 208 0.97 3 20 0.03 4.8 9.6 0.4 1 23 214 237 214 237 0.95 4 20 6.2e-08 9.9e-06 27.5 1.0 1 23 243 265 243 265 0.98 5 20 5.1e-05 0.008 18.3 2.2 1 23 271 293 271 293 0.98 6 20 2.9e-06 0.00045 22.2 0.9 1 23 299 321 299 321 0.98 7 20 1.8e-07 2.9e-05 26.0 1.1 1 23 327 349 327 349 0.98 8 20 8.6e-08 1.4e-05 27.0 1.3 1 23 355 377 355 377 0.98 9 20 0.00013 0.021 17.0 1.5 1 23 383 405 383 405 0.98 10 20 4.6e-06 0.00072 21.6 1.9 1 23 411 433 411 433 0.97 11 20 4.1e-05 0.0065 18.6 1.1 1 23 439 462 439 462 0.97 12 20 3.7e-06 0.00059 21.9 2.1 1 23 468 490 468 490 0.98 13 20 5.1e-06 0.00081 21.5 2.5 1 23 496 518 496 518 0.98 14 20 0.03 4.7 9.6 0.3 1 23 524 547 524 547 0.94 15 20 7.4e-06 0.0012 20.9 2.5 1 23 553 575 553 575 0.98 16 20 4.4e-06 0.0007 21.7 2.0 1 23 581 603 581 603 0.98 17 20 1.9e-07 3e-05 26.0 0.5 1 23 609 631 609 631 0.99 18 20 1.1e-06 0.00018 23.5 1.1 1 23 637 660 637 660 0.97 19 20 7.2e-05 0.011 17.8 3.2 1 23 666 688 666 688 0.98 20 20 1e-07 1.6e-05 26.8 0.9 1 23 694 716 694 716 0.98
Sequence Information
- Coding Sequence
- ATGGAGGTTGATCCGTGTGAATTTAAGATAAAAACTGAAGTTGAGCATACAGAGATTAATATCAAAGTTGATGATGCGGACTCAAACATTGAGGCGAACTCTGAGCTAGATCCAGTCACTCCTGGTTTTGAATTTGTGGCCGTGAAAAAGGAAATTattgatgaagaagaagaagaagaggaggaggaggatgaacTTGACAACTGGCCGTCCAATCCACTCTGCAGTGACCGAATCAAAACTGAGGAGGATGCAGATAATTCAGTAGATGTCGATGATGAATCATTCCAGGTCAAGAAAGAAGATATTTCCGAGTCGATTGTGGATGCCAATTGGTCCGATCTATCCGAGAAAGATAATGAATACGGTGATGATGGTACCGAGACGAGTGCGAGTAATGTCTGCCGAAAGGAATTTATGCAAGAGAGTTCTTCAGATTTGAATCAGTCGTTAGGTGATGGTACTAAAccatttaagtgtgatttgtgtgAAAGAAAATTCAAAGACAAAAGCAATTTCAAGAGGCACATGTTAGTTCATAGCGATGTGAAACCGTTCCGATGCGAAGTTTGCCAGAAGGGTTTCAAAACGAAATACGAATTGAAACCTCATATGCTGTTGCACAACGGTTCTGATCCGTTCAAGTGCGATGTCTGTCGAAAGGAATTTCTCATCGAAAGCAGGTTGAAGAGGCACATGGTAATAGTTCATAGTGATGCGCGACCCTTTAAATGTGACATTTGCCAAAAGGAATTCAAAGACCGAAGCAATTTGAATTCGCACATGTTGGTGCATAGCGATGCGAGACCTTTCAAATGCGATATCTGCCAAAAGGAGTCCAAAAGCAGACGTGATTTTAAGAAGCACATGTTAGTTCATAACGATGCAAGACCCTTCAAATGTAATTTATGCGAAAAGGAATTCAAAGAACGAAGCAATTTGAATTCGCACATGGTGGTGCATAGCGATGCGAGacctttcaaatgtaatttatgcGAAAAGGAATTCAAAGACCGAAGCAATTTGAATTCGCACATGTTAGTTCATAACGATGCAAGACCCTTCAAATGTAATTTATGCGGAAAGGAATTCAAAGACCGAAAAAATTTGAATTCGCACATGTTGGTGCATAGCGATGCGAGACCTTTCAAATGCGATATCTGCCAAAAGGAGTCGAAAAGCAGGAGGGATTTTAATAAGCACATGGTTGTTCATAGTGATGCAAGACCCTTCGAGTGTGACGTATGCCAGAAGGGTTTTAAAGACAAGCGTAGTTTGAAACACCACATGGTAGTTCACGACGATGTGAATCCTTTCAAATGTAATTCGTGCCAAAAGGAATTCAACGGCAGAAGTGATTTTAATAAGCACATGGAAATAGTTCATAATGAAGTGCGACCGTTCAAATGTGACGTTTGCCAGAAGgaattcaaagttaaaaaaaattttaagaggcATATATTGGTGCATAGTGATGTGAGACCTTTCCAATGTGAAGTTTGCCAGAAGGGTTTCATCACGAAATACGAATTGAAAACTCACATGTTGCATCACGGCGATTCTGATCCGTTCAAGTGTGATGTATGCCAAAAGGAATTCCTCCTGGAAAGCAGATTGAAAAGTCACATGGTGGTAGTTCACAGCGATGTGAGACCGTTCAAATGTGACATCTGTCAGAAGCGATTCAAAGGGCGTAGCAATTTTATGAAGCACACGTTAGTTCATAGCGATTTAAAACCGTTCAAATGCGATTTGTGCGGAAAGGAATTCAAAGGCAAATGCAATTTGAATATGCACATGTTAGTTCATAGCGATACGAGACCGTACAAATGTAGTTTGTGCGATAAAGAATTCAAAGGTAGAAGCAATTTGAACGCACACATGTTAGTCCATAGCTACGCGAGGCCGTTCAAATGTAATTTGTGCGAAAAGGAATTCAAAGACAGAAGTGATTTTAAGAAGCACATGGCGATAGTTCACACCGAAGCGAGGCCCTTCAAATGCGATGTATGCGAGAAGGAATTCAAAGATAAGCGTTGTTTGAAGTACCACATGGTCGTACATAGCGACGCGTCACCCTTCAAGTGCGATGTTTGTCCGAAGGGATTCGCGGACAAAAGCAATTACAGGAGACACATGTTACGTCATAGTAAAGTGGTTAGTGACGAGACGATTTTAGACGAAAATGTAACTTGA
- Protein Sequence
- MEVDPCEFKIKTEVEHTEINIKVDDADSNIEANSELDPVTPGFEFVAVKKEIIDEEEEEEEEEDELDNWPSNPLCSDRIKTEEDADNSVDVDDESFQVKKEDISESIVDANWSDLSEKDNEYGDDGTETSASNVCRKEFMQESSSDLNQSLGDGTKPFKCDLCERKFKDKSNFKRHMLVHSDVKPFRCEVCQKGFKTKYELKPHMLLHNGSDPFKCDVCRKEFLIESRLKRHMVIVHSDARPFKCDICQKEFKDRSNLNSHMLVHSDARPFKCDICQKESKSRRDFKKHMLVHNDARPFKCNLCEKEFKERSNLNSHMVVHSDARPFKCNLCEKEFKDRSNLNSHMLVHNDARPFKCNLCGKEFKDRKNLNSHMLVHSDARPFKCDICQKESKSRRDFNKHMVVHSDARPFECDVCQKGFKDKRSLKHHMVVHDDVNPFKCNSCQKEFNGRSDFNKHMEIVHNEVRPFKCDVCQKEFKVKKNFKRHILVHSDVRPFQCEVCQKGFITKYELKTHMLHHGDSDPFKCDVCQKEFLLESRLKSHMVVVHSDVRPFKCDICQKRFKGRSNFMKHTLVHSDLKPFKCDLCGKEFKGKCNLNMHMLVHSDTRPYKCSLCDKEFKGRSNLNAHMLVHSYARPFKCNLCEKEFKDRSDFKKHMAIVHTEARPFKCDVCEKEFKDKRCLKYHMVVHSDASPFKCDVCPKGFADKSNYRRHMLRHSKVVSDETILDENVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283772;
- 90% Identity
- -
- 80% Identity
- -