Basic Information

Insect: Catonia carolina
Gene Symbol: -
Assembly: GCA_035578175.1
Location: JAQMRL010000015.1:13203269-13214833[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.00033 0.052 15.8 3.8 1 23 146 168 146 168 0.98

2 21 1.7e-05 0.0028 19.8 0.7 1 23 174 196 174 196 0.98

3 21 3.7e-07 5.9e-05 25.0 0.8 1 23 202 224 202 224 0.98

4 21 2e-06 0.00032 22.7 3.0 1 23 230 252 230 252 0.98

5 21 1.3e-06 0.00021 23.3 0.7 1 23 258 280 258 280 0.98

6 21 1.2e-05 0.0018 20.3 2.7 1 23 286 308 286 308 0.98

7 21 1.2e-05 0.002 20.2 4.8 1 23 314 336 314 336 0.98

8 21 3.7e-07 5.9e-05 25.0 0.8 1 23 342 364 342 364 0.98

9 21 1.7e-06 0.00027 22.9 2.0 1 23 370 392 370 392 0.98

10 21 4.4e-07 7e-05 24.8 0.7 1 23 398 420 398 420 0.98

11 21 7.3e-06 0.0012 21.0 0.8 1 23 426 448 426 448 0.98

12 21 5.4e-05 0.0087 18.2 3.2 1 23 454 476 454 476 0.98

13 21 1.7e-07 2.7e-05 26.1 1.0 1 23 482 504 482 504 0.98

14 21 1.7e-06 0.00028 22.9 2.9 1 23 510 532 510 532 0.98

15 21 3.8e-07 6.1e-05 25.0 0.7 1 23 538 560 538 560 0.98

16 21 3.7e-05 0.0058 18.8 0.7 1 23 566 588 566 588 0.98

17 21 5.4e-05 0.0087 18.2 3.2 1 23 594 616 594 616 0.98

18 21 2.6e-07 4.1e-05 25.5 1.2 1 23 622 644 622 644 0.98

19 21 7.3e-06 0.0012 21.0 3.7 1 23 650 672 650 672 0.97

20 21 3.8e-07 6.1e-05 25.0 0.7 1 23 678 700 678 700 0.98

21 21 3.7e-05 0.0058 18.8 0.7 1 23 706 728 706 728 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.00033	0.052	15.8	3.8	1	23	146	168	146	168	0.98
2	21	1.7e-05	0.0028	19.8	0.7	1	23	174	196	174	196	0.98
3	21	3.7e-07	5.9e-05	25.0	0.8	1	23	202	224	202	224	0.98
4	21	2e-06	0.00032	22.7	3.0	1	23	230	252	230	252	0.98
5	21	1.3e-06	0.00021	23.3	0.7	1	23	258	280	258	280	0.98
6	21	1.2e-05	0.0018	20.3	2.7	1	23	286	308	286	308	0.98
7	21	1.2e-05	0.002	20.2	4.8	1	23	314	336	314	336	0.98
8	21	3.7e-07	5.9e-05	25.0	0.8	1	23	342	364	342	364	0.98
9	21	1.7e-06	0.00027	22.9	2.0	1	23	370	392	370	392	0.98
10	21	4.4e-07	7e-05	24.8	0.7	1	23	398	420	398	420	0.98
11	21	7.3e-06	0.0012	21.0	0.8	1	23	426	448	426	448	0.98
12	21	5.4e-05	0.0087	18.2	3.2	1	23	454	476	454	476	0.98
13	21	1.7e-07	2.7e-05	26.1	1.0	1	23	482	504	482	504	0.98
14	21	1.7e-06	0.00028	22.9	2.9	1	23	510	532	510	532	0.98
15	21	3.8e-07	6.1e-05	25.0	0.7	1	23	538	560	538	560	0.98
16	21	3.7e-05	0.0058	18.8	0.7	1	23	566	588	566	588	0.98
17	21	5.4e-05	0.0087	18.2	3.2	1	23	594	616	594	616	0.98
18	21	2.6e-07	4.1e-05	25.5	1.2	1	23	622	644	622	644	0.98
19	21	7.3e-06	0.0012	21.0	3.7	1	23	650	672	650	672	0.97
20	21	3.8e-07	6.1e-05	25.0	0.7	1	23	678	700	678	700	0.98
21	21	3.7e-05	0.0058	18.8	0.7	1	23	706	728	706	728	0.98

Sequence Information

Coding Sequence: ATGGAAGTTCGACAGTCTGAGATAAAAATTGAAGTTATGCATACAGAAATTGAATTGAAAGTTGAGTGTGAAGATTTAATTACTGATGAAAACTCCCAGCCAGATCCTGTTGGATTTGATTCGATTCCCGTGAAAGTGGAACAGGAGATCGCTCAGGAAGATGAGTGGAGTCCAATTGAAGATGAGAACTGCTCTTCAAATCCTCTGGCAAATAATTCCATTAAAACTGAAAAGGATAACGCAAGCGGTTCTGAAGAGGTGAAATGGGAAGTCGAAAAATCTAGTGGAGAACTGGTGTCGATTAATATAGACTATAGTTATTCTAGCGGTGATATAGACAGTGATTGTGGTGCAACACGTGTCACCACAAGTAGTGATTCTGAATTAAATAGCGCAACGTATCGTAAGGTATCATCGCGTGGTGGTGTTACGCCATTTAAATGTAACGTCTGTAATAAAGAGTTCATTCAGAGAGGTAATTTGAAATGTCACCGGTTAACACATACCGGTGCTAAACCGTTTAAATGCGAATTGTGCCAAATCGAATTCACGCAGAAAGGTACGCTAAACACTCATATGTTATTACATAACGATTCGAAGCCGTTCAAGTGCGATTTATGCGGAAAAGAATTTACGCAAAAAGGGTCGCTGAGTAGtcacatgttatcacatagtggcgCTAAGCCGTTTAAATGCGAATTGTGCCAAAAGAAATTCACGCAGAAATATTCGCTGAACACTCATATGTTATTGCATGCCGATTCGAAGCCATTCAAGTGCGATTTATGCGGGAAAGAATTTACGCTAAAAGCATCGCTTAGTCGtcacatgttatcacatagtggcgCTAAACCGTTTAAATGTGATTTGTGTCCGAACGAATACACACAGAAATCTCATCTAAACAAgcacatgttatcacatagtggcgCTAAACCGTTTAAATGCAATGTTTGCCGAAAGGAATTCAAGCATAAATATTCGCTGAACACTCATATGTTATTGCATGCCGATTCGAAGCCATTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGGGTCGCTGAGTAGtcacatgttatcacatagtggcgCTAAGCCGTTTAAATGCGAATTGTGCCGAAAGGAATTCACGCAGAAAAGTTCGCTGAACACTCATATGTTATTGCATGCCGATTCGGAGCCTTTCATGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCAACGCTGAGTAGgcacatgttatcacatagtggcgCTAAGCCGTTTAAATGTGATTTGTGTCCGACGGAATACACACGAAAATCTTATCTAGCCACCCACATGTTGTCACATAGTGACGCTAAACCGTTTAAATGCGAATTGTGCCAAAAGGAATTCATGCAGAAACATTCGCTGAACTCTCATATGTTATTGCATACCAATTCCAATCCGTTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCAACGCTGAGTAGgcacatgttatcacatagtggcgCTAAGCTGTTTAAATGCGAATTGTGCCGAAAGAAATTCACGCAGAAAAGTTCGCTGAACACTCATATGTTATTGCATGCCGATTCGAAGCCGTTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCATCGCTGAGTAGtcacatgttatcacatagtggcgCTAAGCCGTTTAAATGTGATTTGTGTCCGAACGAATACACACGAAAATCTTATCTAGCCACCCACATGTTGTCACATAGTGACGCTAAACCGTTTAAATGCGAATTGTGCCAAAAGGAATTCATGCAGAAACATTCGCTGAACTCTCATATGTTATTGCATACCAATTCCAATCCGTTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCAAAGCTGAGTAGgcacatgttatcacatagtggcgCTAAGCTGTTTAAATGCGAATTGTGCCGAAAGAAATTCACGCAGAAAAGTTCGCTGAACACTCATATGTTCTTGCATGCCGATTCGAAGCCGTTCAAGTGCGATTTATGCGGGAAAGAATTTACGCAAAAAGCATCGCTGAGTAGtcacatgttatcacatagtggcgCTAAGCCGTTTAAATGTGATTTGTGTCCGAACGAATACACACGGAAATCTTATCTAGCCACCCACATGTTGTCACATAGTGACGCTAAACGGTTTTAA
Protein Sequence: MEVRQSEIKIEVMHTEIELKVECEDLITDENSQPDPVGFDSIPVKVEQEIAQEDEWSPIEDENCSSNPLANNSIKTEKDNASGSEEVKWEVEKSSGELVSINIDYSYSSGDIDSDCGATRVTTSSDSELNSATYRKVSSRGGVTPFKCNVCNKEFIQRGNLKCHRLTHTGAKPFKCELCQIEFTQKGTLNTHMLLHNDSKPFKCDLCGKEFTQKGSLSSHMLSHSGAKPFKCELCQKKFTQKYSLNTHMLLHADSKPFKCDLCGKEFTLKASLSRHMLSHSGAKPFKCDLCPNEYTQKSHLNKHMLSHSGAKPFKCNVCRKEFKHKYSLNTHMLLHADSKPFKCDLCGKEFTQKGSLSSHMLSHSGAKPFKCELCRKEFTQKSSLNTHMLLHADSEPFMCDLCGKEFTQKATLSRHMLSHSGAKPFKCDLCPTEYTRKSYLATHMLSHSDAKPFKCELCQKEFMQKHSLNSHMLLHTNSNPFKCDLCGKEFTQKATLSRHMLSHSGAKLFKCELCRKKFTQKSSLNTHMLLHADSKPFKCDLCGKEFTQKASLSSHMLSHSGAKPFKCDLCPNEYTRKSYLATHMLSHSDAKPFKCELCQKEFMQKHSLNSHMLLHTNSNPFKCDLCGKEFTQKAKLSRHMLSHSGAKLFKCELCRKKFTQKSSLNTHMFLHADSKPFKCDLCGKEFTQKASLSSHMLSHSGAKPFKCDLCPNEYTRKSYLATHMLSHSDAKRF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00283768;
90% Identity: iTF_00283768;
80% Identity: iTF_00283768;